Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1149
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   2.3  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   4.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   4.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.3  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   9.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.3  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   9.3  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 429 YMRQSKIYRRFHKRHATRYTQRLRNYKKHSRHHKPEHVLFAC 554
           +MR     + +H  H  R   ++ N ++H R H  E   +AC
Sbjct: 28  HMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERP-YAC 68


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 584 TSKKRNSSRDTREQNVF 534
           T++KRNS    REQN +
Sbjct: 33  TNRKRNSRSREREQNSY 49


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 584 TSKKRNSSRDTREQNVF 534
           T++KRNS    REQN +
Sbjct: 33  TNRKRNSRSREREQNSY 49


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 9    CRGPYL*RQQYGANARGYGAATNE 80
            C    L  + YG NARG    T E
Sbjct: 1888 CDRDQLVNRNYGVNARGKDGMTTE 1911


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 124 CITYKSPCSPDA 159
           C+  + PC+PDA
Sbjct: 49  CLLDQGPCTPDA 60


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 146 VRPTRIMTTDGLSATATSSNVLKCQKWFCPFS 241
           VRP  +         AT+  + K  ++F PFS
Sbjct: 339 VRPATVQYDTCCQGRATAIYIDKVSRFFFPFS 370


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 124 CITYKSPCSPDA 159
           C+  + PC+PDA
Sbjct: 49  CLLDQGPCTPDA 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,262
Number of Sequences: 438
Number of extensions: 3964
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)