Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1148
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   1.5  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    27   2.0  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    26   4.7  
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    25   6.2  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    25   6.2  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    25   6.2  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    25   8.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.1  

>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 20/47 (42%), Positives = 25/47 (53%)
 Frame = -3

Query: 334 TTFTVSIGISPLPSGLSFENSIRSGNSFGINLSSIPDPLSNQILPIW 194
           TT   SI   P PSGLS  NS  + +SF      IP  +  Q+LPI+
Sbjct: 337 TTSIPSINNQPFPSGLSASNSNFASSSF------IPQSVP-QLLPIY 376


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 24  CADSEEDLLVKPVSLGNVNIIRSLSEY--RGNNIRTIEQAELAIIVSRAH 167
           C D+E+++ V  +S      +  + E   RGN+ RT+   E   + SR+H
Sbjct: 208 CEDAEQNVSVPGLSYFTPTNLEEVMEIIIRGNSNRTMSPTEANAVSSRSH 257


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 362 RLSWYF-SKTYNFYCFYRHIAVTLGTL 285
           R  WY  S + NF+ FY H+   +G +
Sbjct: 255 RFLWYSTSYSLNFHLFYHHLTTMMGQM 281


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 174 ALIEAHDQ--IGKIWLERGSGIDDKLIPNEFPDLIEFSKESPE 296
           AL E H+   IGKI  +  S + DK     FP LI F  +  E
Sbjct: 66  ALFEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGSE 108


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = -3

Query: 289 LSFENSIRSGNSFGINLSSIPDPLSNQILPIWS*ASINALKCALDTMIASSACSIVRILF 110
           L+ +N  RS ++   +    P   S  ++P++    ++ L C L + +AS  C++V   F
Sbjct: 181 LTHKNLCRSIHNITTSYRLDPRDTSYVVMPLFH---VHGLLCGLLSTLASGGCAVVPPKF 237

Query: 109 PRYS 98
             +S
Sbjct: 238 SAHS 241


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
 Frame = +3

Query: 243 LIPNEFPDLIEFSKESPEGNGDMPIETVKVVGLRKVPGQPLGLTVTTDEHGQLIVARILA 422
           +I ++F  L   S   P+G+     + + ++ +R    +PL       E  Q +V  +  
Sbjct: 155 MIEHKFRHLPVVSDGGPDGSAGDEGDVIGIINMRACLREPLNRIARQQEAAQKLVEALEG 214

Query: 423 GSAAAKQALVSVGDVLLEVDGVH----IESEEQLKEACS 527
                +   VS       V G H    +E  E LK+  S
Sbjct: 215 AQEEIENKSVSGNTNSSSVSGNHAAEFLEYVESLKKKAS 253


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 446 GLFCCCTSCKYPCNNKLSML 387
           GLF CC  C  PC+  LS L
Sbjct: 127 GLFICCEGC--PCSFHLSCL 144


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
 Frame = -3

Query: 421 ASILATISCPCSSVVTVKPKGCPGTFLRPT---TFTVSIGISPLPSGLSFENSIRS---G 260
           +S L T S  C++  ++ P G   T + PT   T T S    P P+  S   +  S    
Sbjct: 275 SSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPS 334

Query: 259 NSFGINLSSIPDPLSNQILPI 197
            S     S+   P  N   P+
Sbjct: 335 TSTSCTTSTSIPPTGNSTTPV 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,346,428
Number of Sequences: 5004
Number of extensions: 49061
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)