Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1148
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438... 31 0.51
10_01_0243 + 2538994-2539193,2539297-2539471,2539568-2539726,254... 30 1.6
10_08_0861 - 21139173-21139613 29 2.7
03_05_0655 + 26491238-26491696 29 2.7
06_03_0468 - 21083754-21083869,21083986-21084069,21085633-210859... 29 3.6
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 29 3.6
07_03_1770 - 29382508-29382591,29382901-29383041,29383134-293835... 28 4.8
03_02_0691 + 10432615-10433109,10433155-10433216,10433526-104335... 28 4.8
11_02_0032 + 7564153-7564719,7564844-7565128,7565207-7565524,756... 28 6.3
10_08_0168 - 15379897-15380819,15381306-15381894 28 6.3
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 28 6.3
05_01_0329 - 2580083-2580115,2580787-2580864,2580986-2581078,258... 28 6.3
04_03_0979 + 21389457-21389469,21390053-21390139,21390253-213903... 27 8.3
>03_02_0838 +
11641484-11642030,11643614-11643650,11643784-11643841,
11646176-11646265,11646796-11646913,11648093-11648277,
11648330-11648455,11648578-11648634,11648741-11648821,
11649068-11649102,11649265-11649354,11649443-11649599,
11649785-11649901
Length = 565
Score = 31.5 bits (68), Expect = 0.51
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +3
Query: 222 GSGIDDKLIPNEFPDLIEFSKESPEGNGDM-PIETVKVVGLRKVPGQPLGLTVTTDEHGQ 398
GS + DK+I E P + F E D+ P +V + KV GL+ + H +
Sbjct: 192 GSQVFDKIIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPKVKDGLTGLSKAEERHVE 251
Query: 399 LIVARILAGSAAAKQALVSVGDVLLEVDG 485
++ + AKQ + G ++ DG
Sbjct: 252 ILGYLLYVAKVVAKQEGLEDGYRIVINDG 280
>10_01_0243 +
2538994-2539193,2539297-2539471,2539568-2539726,
2540109-2540205,2540420-2540490,2541196-2541247,
2541778-2541826,2541965-2542102,2542653-2542772,
2542861-2542990
Length = 396
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -2
Query: 437 CCCTSCKYPCNNKLSMLIGCHSQT*RLSWYFSKTYNFYCFYRHIAVTLGT 288
C C +C+ L+ L+ H ++ T+++ CF+R I T+ T
Sbjct: 324 CSCFTCQNHTRAYLNHLLNVHEMLAQILLEIHNTHHYLCFFRLIRDTIKT 373
>10_08_0861 - 21139173-21139613
Length = 146
Score = 29.1 bits (62), Expect = 2.7
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = +3
Query: 297 GNGDMPIETVKVVGLRKVPGQPLGLTVTTDEHGQLIVARILAGSAAAKQALVSVGDVLLE 476
G+G PI+ +K+ V LG+ V HG +LAG A A A+ V
Sbjct: 61 GHGRCPIDALKLRVCANVLNGALGVNVG---HGPYDCCPLLAGLADADAAVCLCTAVKAN 117
Query: 477 VDGVHIESEEQLK---EACSKT 533
V GV++ +LK C KT
Sbjct: 118 VLGVNLNVPVELKLILNKCGKT 139
>03_05_0655 + 26491238-26491696
Length = 152
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = +3
Query: 219 RGSGIDDKLIPNEFPDLIEFSKESPEGNGDMPIETVKVVGLRKVPGQPLGLTVTTDEHGQ 398
RG G + P E P L F + GN P K++GL G LGL ++ G
Sbjct: 73 RGGGAAAAVRPEEDPFLAAFLACTERGNRGTPKGGSKLLGLGLGLGSGLGLGLSCKGPGG 132
Query: 399 LIVARILAGSAAAKQAL 449
++ + + QAL
Sbjct: 133 VVQSVVRLAKTMPPQAL 149
>06_03_0468 -
21083754-21083869,21083986-21084069,21085633-21085920,
21087525-21087687
Length = 216
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 394 PCSSVVTVKPKGCPGTFLRPTTFTVSIGISPL 299
P S V V+PK CPG R + F ++PL
Sbjct: 68 PTSGVFEVEPKCCPGFMYRCSIFIGRTSLNPL 99
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 195 QIGKIWLERGSGIDDKLIPNEFPDLIEFSKESPEGNGDM 311
++ +IW+ERG G KL+ ++ L +S+ + D+
Sbjct: 355 KLSQIWIERGLGFPSKLVMDDSMPLHAWSRSAVASESDL 393
>07_03_1770 -
29382508-29382591,29382901-29383041,29383134-29383520,
29383685-29383930,29385396-29385437,29385973-29386461
Length = 462
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 522 RLPSVAPLIQCEPRLLPVEHHQQIL 448
RLP+VAPL +C RLL +E + L
Sbjct: 56 RLPNVAPLSKCRLRLLKLERVKDYL 80
>03_02_0691 +
10432615-10433109,10433155-10433216,10433526-10433565,
10434562-10434807,10435020-10435189,10435323-10435539,
10435615-10435755,10435943-10436026
Length = 484
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 522 RLPSVAPLIQCEPRLLPVEHHQQIL 448
RLP+VAPL +C RLL +E + L
Sbjct: 58 RLPAVAPLSKCRLRLLKLERVKDYL 82
>11_02_0032 +
7564153-7564719,7564844-7565128,7565207-7565524,
7565612-7565839,7566662-7566762,7566852-7566933,
7567230-7567364,7567460-7567516,7568030-7568167
Length = 636
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 69 GNVNIIRSLSEYRGNNIRTIEQAELAIIVSRAHFKALIEAHDQIGKIWLERG-SGI 233
GN ++ S+ G N I + ++S H K L AH ++ KIW+ G SGI
Sbjct: 80 GNTEVVAIQSKENGRNSNNILEDGEKSVLSSDHSKKL-SAHHRL-KIWITSGHSGI 133
>10_08_0168 - 15379897-15380819,15381306-15381894
Length = 503
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 396 QLIVARILAGSAAAKQALVSVGDVLLEVDGV-HIESEEQLKEACSKTK 536
+L+V AG A + V G+V ++GV H E E L+E K +
Sbjct: 421 RLVVREWRAGVAVGDRGAVDAGEVRARIEGVMHGEEGEVLREQVGKMR 468
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 27.9 bits (59), Expect = 6.3
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -3
Query: 400 SCPCSSVVTVKPKGCPGTFLRPTTFTVSIGISPLPSGLSFENSIRSGN-SFGI-NLSSIP 227
S P ++ V G P FL TT + I +P G I G G+ +++ +
Sbjct: 349 SIPTGEMMPVS--GSPFNFLTETT--IGSRIDQVPGGYDHNFVIDCGEVKSGLCHVAKVT 404
Query: 226 DPLSNQILPIWS 191
DP S+++L IW+
Sbjct: 405 DPSSSRVLDIWA 416
>05_01_0329 -
2580083-2580115,2580787-2580864,2580986-2581078,
2581209-2581326,2583350-2583440,2585167-2585207,
2585854-2585981,2586078-2586353,2587318-2587472,
2587557-2587700,2587991-2588567
Length = 577
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 399 LIVARILAGSAAAKQALVSVGDVLLEVDGVHIESEEQLK 515
LIV + GS A K V VGDV+ +G HI S +L+
Sbjct: 506 LIVKEVSEGSIAEKLG-VRVGDVIKFFNGKHISSTVELE 543
>04_03_0979 +
21389457-21389469,21390053-21390139,21390253-21390359,
21390652-21390768,21391154-21391199,21392518-21392591,
21392785-21392838,21392926-21393030,21393126-21393184,
21393273-21393483,21393640-21393699
Length = 310
Score = 27.5 bits (58), Expect = 8.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 353 WYFSKTYNFYCFYRHI 306
W F+KT N C+YR++
Sbjct: 140 WQFTKTVNVVCYYRYL 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,076,073
Number of Sequences: 37544
Number of extensions: 319908
Number of successful extensions: 820
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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