Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1147
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0469 + 17864265-17864789,17865648-17865854,17865936-178661... 29 2.8
07_03_0002 - 12236436-12237130,12237603-12237750 29 2.8
11_04_0163 + 14296868-14297380,14297548-14297622,14298149-14298223 29 3.8
10_01_0168 - 1883380-1883594,1884572-1888325 29 3.8
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 29 3.8
11_04_0024 - 12376642-12377362,12377614-12377849 28 5.0
11_01_0778 + 6496465-6496565,6497072-6497630 28 5.0
01_05_0010 + 17112177-17112710 28 5.0
07_01_1052 - 9234506-9235037,9235148-9235849,9236169-9236313,923... 28 6.6
04_04_0605 + 26549904-26551939,26553931-26554180,26554764-265548... 28 6.6
03_05_0113 + 20958580-20958703,20958768-20959507 28 6.6
08_02_0187 - 13978194-13979093,13980332-13980679 27 8.7
06_02_0337 - 14638429-14639295,14640281-14640460,14640743-14641831 27 8.7
05_03_0215 + 10347431-10348831 27 8.7
03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,661... 27 8.7
02_03_0056 - 14525491-14525833,14525882-14526125,14526447-145265... 27 8.7
>09_04_0469 +
17864265-17864789,17865648-17865854,17865936-17866175,
17866705-17866771,17866872-17867015,17867202-17867297,
17867818-17867975,17868054-17868190,17868551-17868752
Length = 591
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 174 PVCLPKTPDSLYTGAEAIVA 233
P+CLP P+S+ AEAI+A
Sbjct: 546 PICLPSLPESVAPNAEAIMA 565
>07_03_0002 - 12236436-12237130,12237603-12237750
Length = 280
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +3
Query: 72 VVKVIVHNFNLKELSNDISLIQLSRPIGYSHAIRPVCLPKTPDSLYTGAEAIVAGWGATG 251
V V H +N +EL+ + I+ SR G R V + S + EA GW TG
Sbjct: 102 VPNVRYHLYNCQELTIPLQTIEESRAGGTYRETRSVARNEREGSSSSTTEA---GWEPTG 158
Query: 252 ETGNWS 269
+ W+
Sbjct: 159 DAPGWT 164
>11_04_0163 + 14296868-14297380,14297548-14297622,14298149-14298223
Length = 220
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +3
Query: 90 HNFNLKELSNDISLIQLSRPIG-YSHAIRPVCLPKTPDSLYTGAEAIVAGWGATGETGNW 266
H +N EL+ + I+ SR G Y + S T + AGW TG+ W
Sbjct: 74 HLYNCHELTIPLQTIEESRAGGTYRETCNMTRNERESSSSSTPVQMYEAGWAPTGDAPGW 133
Query: 267 S 269
+
Sbjct: 134 T 134
>10_01_0168 - 1883380-1883594,1884572-1888325
Length = 1322
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 93 NFNLKELSNDISLIQLSRPIGYSHAIRPVCLPK 191
N ++KEL DIS++ + + SH IR LPK
Sbjct: 610 NCDIKELPEDISILYHLQTLNVSHCIRLRRLPK 642
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 569 ASPVGIVPDPVQVFGNPRIHSRVTLSSTPVAP 474
ASPV + P + NP +HSR + S PV P
Sbjct: 420 ASPVALPPHSLSP-RNPNVHSRSPIPSPPVLP 450
>11_04_0024 - 12376642-12377362,12377614-12377849
Length = 318
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +3
Query: 90 HNFNLKELSNDISLIQLSRPIGYSHAIRPVCL-PKTPDSLYTGAEAIVAGWGATGETGNW 266
H +N +EL+ + I+ SR G R + + S T + AGW TG+ W
Sbjct: 155 HLYNCRELTIPLQTIEESRTGGAYRETRNMTRNERESSSSSTPVQLYEAGWEPTGDAPGW 214
Query: 267 S 269
+
Sbjct: 215 T 215
>11_01_0778 + 6496465-6496565,6497072-6497630
Length = 219
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 90 HNFNLKELSNDISLIQLSRPIGYSHAIRPVCL-PKTPDSLYTGAEAIVAGWGATGETGNW 266
H +N EL+ + I+ SR G R + + S T + AGW TG+ W
Sbjct: 114 HLYNCHELTIPLQTIEESRASGTYRETRNLTRNERESSSSSTPMQMYEAGWAPTGDAPGW 173
Query: 267 S 269
+
Sbjct: 174 T 174
>01_05_0010 + 17112177-17112710
Length = 177
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 90 HNFNLKELSNDISLIQLSRPIGYSHAIRPVCL-PKTPDSLYTGAEAIVAGWGATGETGNW 266
H +N EL+ + I+ SR G R + + S T + AGW TG+ W
Sbjct: 86 HLYNCHELTIPVQTIEESRAGGTYRETRNMTRNERESSSSSTPVQMYEAGWAPTGDAPGW 145
Query: 267 S 269
+
Sbjct: 146 T 146
>07_01_1052 -
9234506-9235037,9235148-9235849,9236169-9236313,
9236478-9237069
Length = 656
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +3
Query: 90 HNFNLKELSNDISLIQLSRPIG-YSHAIRPVCLPKTPDSLYTGAEAIVAGWGATGETGNW 266
H +N EL+ + I+ SR G Y + S T + AGW A G+ W
Sbjct: 523 HLYNCHELTIPLQTIEESRVGGAYRETHNMTRNERESSSSSTPVQMYEAGWAAIGDASGW 582
Query: 267 S 269
+
Sbjct: 583 T 583
>04_04_0605 + 26549904-26551939,26553931-26554180,26554764-26554829,
26555194-26555388,26555830-26556141,26556537-26556595,
26557138-26557381,26557466-26557528,26557997-26558386
Length = 1204
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -2
Query: 268 DQFPVSPVAPHPATIASAPVYKLS-GVLGRHTGRMACEYPIGRLSCISEMSLLSSLRLKL 92
D F V+ + H + YK++ L +T +A +YP R++C++ + + + + +
Sbjct: 880 DDFKVNLIEAHGWPTGGSSAYKVAKAALNAYTRILAKKYPTLRINCLTPGYVKTDISMHM 939
Query: 91 WTMT 80
+T
Sbjct: 940 GVLT 943
>03_05_0113 + 20958580-20958703,20958768-20959507
Length = 287
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +3
Query: 90 HNFNLKELSNDISLIQLSRPIG-YSHAIRPVCLPKTPDSLYTGAEAIVAGWGATGETGNW 266
H +N EL+ + I+ SR G Y + S T + AGW TG+ W
Sbjct: 200 HLYNCHELTIPLQTIEESRAGGTYRETYNMTRNEQGSSSSSTPVQMYEAGWAPTGDAPGW 259
Query: 267 S 269
+
Sbjct: 260 T 260
>08_02_0187 - 13978194-13979093,13980332-13980679
Length = 415
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +3
Query: 12 RVKFGEHDRCDRSHTPETRYVVKVIVHNFNLKELSNDISLIQLSRPIGYSHAIRPVCLP 188
RV F D D S TP + VK ++KE+ D++++Q+S+P+ A PV P
Sbjct: 137 RVSFTAEDAAD-SATPSS--FVK------SVKEIPYDLAVLQISKPLSSPEAEAPVAPP 186
>06_02_0337 - 14638429-14639295,14640281-14640460,14640743-14641831
Length = 711
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 90 HNFNLKELSNDISLIQLSRPIGYSHAIRPVCL-PKTPDSLYTGAEAIVAGWGATGETGNW 266
H +N EL+ + I+ SR G R + + S T + AGW TG+ W
Sbjct: 606 HLYNCHELTIPLQTIEESRAGGTYRETRNMTRNEQESSSSSTPVQMYEAGWAPTGDAPRW 665
Query: 267 S 269
+
Sbjct: 666 T 666
>05_03_0215 + 10347431-10348831
Length = 466
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 90 HNFNLKELSNDISLIQLSRPIG-YSHAIRPVCLPKTPDSLYTGAEAIVAGWGATGETGNW 266
H +N EL+ + ++ SR G Y + + S T + AGW TG+ W
Sbjct: 283 HLYNCHELTIPLQTVEESRADGTYRETRKMTRNEQGSSSPSTPVQMYEAGWAPTGDAPGW 342
Query: 267 S 269
+
Sbjct: 343 T 343
>03_02_0232 +
6614784-6614882,6616145-6616477,6616708-6616967,
6617328-6617469,6617567-6617938,6618056-6618187,
6618907-6619035,6619125-6621188
Length = 1176
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 181 HTGRMACEYPIGRLSCISEMSLLSSLRLK 95
HT R++C+ + S +SE + LS LR+K
Sbjct: 192 HTARLSCDTLVDFWSALSEETRLSLLRMK 220
>02_03_0056 -
14525491-14525833,14525882-14526125,14526447-14526591,
14526757-14527121,14527323-14527722
Length = 498
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 90 HNFNLKELSNDISLIQLSRPIGYSHAIRPVCL-PKTPDSLYTGAEAIVAGWGATGETGNW 266
H +N EL+ + I+ SR G R + + S T + AGW TG+ W
Sbjct: 306 HLYNCHELTIPLQTIEESRAGGAYRETRNMTRNERESSSSSTPIQMYEAGWAPTGDAPGW 365
Query: 267 S 269
+
Sbjct: 366 T 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,574,536
Number of Sequences: 37544
Number of extensions: 356309
Number of successful extensions: 953
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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