Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1147
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...   100   9e-24
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   0.57 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.3  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score =  100 bits (240), Expect = 9e-24
 Identities = 71/194 (36%), Positives = 100/194 (51%), Gaps = 10/194 (5%)
 Frame = +3

Query: 24  GEHDRCDRSHTPET--RYVVKVIVH-NFNLKELS----NDISLIQLSRPIGYSHAIRPVC 182
           GEHD   ++ T  T    + KVI+H  +++ E      NDI+L++  + I +   + P C
Sbjct: 218 GEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPAC 277

Query: 183 LPKTP--DSLYTGAEAIVAGWGATGETGNWSCMLLKAELPILSNEECQGTSYNSSKIKNT 356
           LP     DS + G++  V GWG T   G  S +L K  L +L+  EC    Y  + + N 
Sbjct: 278 LPFQHFLDS-FAGSDVTVLGWGHTSFNGMLSHILQKTTLNMLTQVECY--KYYGNIMVNA 334

Query: 357 MMCAGYPATAHKDACTGDSGGPLVVENERNVYEL-IGIVSWGYGCARKGYPGVYTRVTKY 533
            MCA       KDAC  DSGGP++ +N R    + IGI+SWG  C +  YP   T+V  Y
Sbjct: 335 -MCA---YAKGKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAECGK--YPNGNTKVGSY 388

Query: 534 LDWIRDNTDGACYC 575
           +DWI   T  A YC
Sbjct: 389 IDWIVSQTPDAEYC 402


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 102 LKELSNDISLIQLSRPIGYSHAIRPV 179
           L+EL+ND    +++RP G  ++I P+
Sbjct: 14  LQELTNDCRYDKMTRPPGEINSINPI 39


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 530 FGNPRIHSRVTLSSTPVAPRND 465
           FG PRI S     S    P ND
Sbjct: 338 FGTPRIMSSFDFQSKDQGPPND 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,211
Number of Sequences: 438
Number of extensions: 3672
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)