Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1145
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 28 1.3
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 27 2.3
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|... 26 5.4
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 26 5.4
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 5.4
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 25 7.1
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 25 7.1
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 25 7.1
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 9.4
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 25 9.4
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 133 SALPSLIGRRLRHYSLRPQRILLTPP 56
SAL L R L H ++PQ +LL PP
Sbjct: 143 SALQFLRSRSLIHRDVKPQNLLLQPP 168
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 115 SVMGVLKTCSDDNVALCLKEKALRYVENVSNSRE 216
S MG+LK DD++ + ++ LR+ S ++
Sbjct: 192 SPMGILKNIQDDSMTIVTNKRILRFEPKTSRGKD 225
>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
2|||Manual
Length = 212
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 284 LYPTSLEPGRIKWTSDFWME 343
+YPTS I WT W+E
Sbjct: 108 IYPTSYTISNILWTFSIWLE 127
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 441 EEVEATPAHTGTPATEDPVPH 503
E A P H G+P TE P P+
Sbjct: 527 ENPPAMPDHNGSPTTEPPKPN 547
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -2
Query: 587 IKPEAKSAALANIRPLTAAKAMIPRK 510
+K + KS+AL + P+T + ++P+K
Sbjct: 468 VKQQKKSSALKIVNPVTHTEVVVPQK 493
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 25.4 bits (53), Expect = 7.1
Identities = 27/103 (26%), Positives = 43/103 (41%)
Frame = +1
Query: 103 DVFRSVMGVLKTCSDDNVALCLKEKALRYVENVSNSRELNLIDGVSLIGQGSPRSARSFE 282
DVF + VL +D+NV + R E+V++ ++ LI + + R F+
Sbjct: 484 DVFDRIRFVLNGLTDNNVEVSRHNNIGRTAESVTHLTDMLLIT-TKDVAFVTDRVNFEFQ 542
Query: 283 PLPDEPRARENQVDLRLLDGVADFLENFVIQLRLPKGAIESAK 411
D R N++ RL D D+ LR+ ES K
Sbjct: 543 RYQDTHRQDLNRILNRLTDSHIDWANR---NLRIWNSVQESLK 582
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 172 PLDTMRRCHRSKFSALPSLIGRRLRHYSLRPQRILL 65
P+D M R R AL + R + H L+P I L
Sbjct: 745 PVDEMWRLFRQILEALAYIHSRGMMHRDLKPGNIFL 780
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Frame = +3
Query: 522 HCL---CRRQGSYVS*SSALGFRFNTPQETA 605
HCL R GS +S +SA FR+++PQ+++
Sbjct: 63 HCLDIPTVRPGSSMSRTSASSFRYSSPQKSS 93
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +3
Query: 351 FLGELCHSATSAEGCH*ICEAILGRRSR*EEEVEATPAHTGTPATE 488
F +LCH E C+ G+R E V +P H G P E
Sbjct: 712 FCEKLCHPDGECESS---CKKECGKRRMYCEHVCQSPCHAGHPCDE 754
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -3
Query: 178 LFPLDTMR-RCHRSKFSALPSLIGRRLRH 95
L PLD ++ RC +S+ +LP ++ R + H
Sbjct: 32 LQPLDLLKTRCQQSQRDSLPKMVRRIILH 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.135 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,579
Number of Sequences: 5004
Number of extensions: 44200
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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