Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1145
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.4  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   5.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.9  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +3

Query: 465 HTGTPATEDPVPHPRLPRNHCLCRRQGSY 551
           H G   ++  +P+PR P  + +  R  +Y
Sbjct: 65  HYGAAGSQQDMPYPRFPPYNRMDMRNATY 93


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +2

Query: 302 EPGRIKWTSDFW---MELLISWRTLSFSY 379
           +PGR     D+    MEL+ +W T+ ++Y
Sbjct: 139 DPGRGHIEDDYVGPAMELVYAWSTIDYTY 167


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 465 HTGTPATEDPVPHPRLPRNHCL 530
           HTG    E P  H R  R+H L
Sbjct: 4   HTGEKPFECPECHKRFTRDHHL 25


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 477  PATEDPVPHPRLPRNH 524
            P +  P P P  PRNH
Sbjct: 1852 PVSGSPEPPPPPPRNH 1867


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 372 NDKVLQEISNSIQKSEVHLI 313
           NDK+LQE+    QK    ++
Sbjct: 401 NDKILQEVIKFRQKQRAEIL 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.135    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,187
Number of Sequences: 438
Number of extensions: 3425
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)