Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1144
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   217   8e-58
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   217   1e-57
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    27   2.9  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   3.8  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   3.8  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   6.6  
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    25   6.6  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   8.8  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  217 bits (531), Expect = 8e-58
 Identities = 104/176 (59%), Positives = 121/176 (68%)
 Frame = +3

Query: 54  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 233
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 234 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 413
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH       
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119

Query: 414 XXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQQINKTKQAVIFLRRLR 581
                              ARGH IE+IPE+PLVV D VQ   KTK+AV  L+ ++
Sbjct: 120 KRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIK 175


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  217 bits (529), Expect = 1e-57
 Identities = 103/176 (58%), Positives = 121/176 (68%)
 Frame = +3

Query: 54  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 233
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 234 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 413
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH       
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119

Query: 414 XXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQQINKTKQAVIFLRRLR 581
                              ARGH IE+IPE+PLVV D VQ   KTK+AV  L+ ++
Sbjct: 120 KRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIK 175


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 53  SIGSPTFSVGVFREERDGAGCSQAPPVRVQGAHTSGP 163
           SI SP+ SVG   +  D +  S + P+ + G  +  P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 115 APCTVSLFSEYTDTKGRATDRLISLL 38
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 128 PVRVQGAHTSGPGQ*CSRFYVQELEAALLREQ 223
           PV VQG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 608 CTP*GYQTMPEAPQEDDSLFGLV 540
           C P  Y     +PQ DDS+F L+
Sbjct: 386 CVPKNYYMTEVSPQSDDSIFKLM 408


>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 498 PELPLVVADKVQQINKTKQAVIFLRRLRHGLISLRCTSLS 617
           P LP V  D V ++N+T+    FL+ +R G   L    LS
Sbjct: 197 PPLPHV-DDLVNKVNRTRDFYQFLKDMRKGFRELHRKDLS 235


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 382 GAGTVASTSDSGERPWQQPLLL-PASQR 462
           G+ T+ STS S  RP+ +P L+ P+++R
Sbjct: 507 GSPTILSTSFSLARPYPEPALVSPSTER 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,806
Number of Sequences: 5004
Number of extensions: 46316
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)