Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1144
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 196 9e-51
07_01_0578 + 4295386-4296489,4297394-4297507 196 1e-50
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.10
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 33 0.14
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 33 0.18
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 32 0.32
08_02_1278 - 25838146-25839411 32 0.32
03_05_0366 - 23505755-23506441 31 0.73
06_01_0017 + 189346-189561,189614-189905,190024-190043 31 0.97
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 30 1.7
08_02_1285 - 25881091-25881798 29 2.2
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 29 2.2
04_01_0588 + 7657510-7657992,7658397-7658843 29 3.9
02_04_0457 + 23093020-23093343,23093798-23093806 29 3.9
03_01_0147 - 1170481-1171260,1171332-1171511 28 6.8
03_01_0092 - 731069-731434,731569-733080 28 6.8
12_02_0488 + 19587337-19587648,19587739-19587798,19587876-195879... 27 9.0
11_06_0209 + 21282079-21282369,21287029-21287137,21287462-212875... 27 9.0
11_01_0411 - 3114959-3115000,3115504-3116703 27 9.0
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 27 9.0
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 27 9.0
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 196 bits (479), Expect = 9e-51
Identities = 96/175 (54%), Positives = 114/175 (65%), Gaps = 1/175 (0%)
Frame = +3
Query: 57 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 233
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 234 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 413
HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRL 122
Query: 414 XXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQQINKTKQAVIFLRRL 578
ARGH IE +PE PLVV+D ++ I KT Q++ L+++
Sbjct: 123 RRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQI 177
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 196 bits (478), Expect = 1e-50
Identities = 95/173 (54%), Positives = 116/173 (67%), Gaps = 2/173 (1%)
Frame = +3
Query: 66 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 239
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 240 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 419
TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRR 125
Query: 420 XXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQQINKTKQAVIFLRRL 578
ARGH IE +PELPLV++D + I KT QA+ L+++
Sbjct: 126 VAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQV 178
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +3
Query: 246 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 356
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 33.5 bits (73), Expect = 0.14
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 352 PPRHMLPKAP*PDLWVPPP 296
PPRH++P+ P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 33.1 bits (72), Expect = 0.18
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +2
Query: 29 ASLK*RNESIGSPTFSVGVFREERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 184
ASL N + P+F V G SQA V + GAHT G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 32.3 bits (70), Expect = 0.32
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +2
Query: 29 ASLK*RNESIGSPTFSVGVFREERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 184
ASL N I +PTF +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>08_02_1278 - 25838146-25839411
Length = 421
Score = 32.3 bits (70), Expect = 0.32
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = -1
Query: 575 APQEDDSLFGLVDLLDFVSYNQGKLGNLFNNVSSSL 468
A +E LF L+D+LD V+ +G+L LF+ S++L
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 0.73
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 132 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 308
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 309 HRSGQGA 329
+ + + A
Sbjct: 168 NDNDEEA 174
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 30.7 bits (66), Expect = 0.97
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = -1
Query: 569 QEDDS--LFGLVDLLDFVSYNQGKLGNLFNNVSSSLNERWDAGSSNGCCQGR--SPLSEV 402
+EDD L G ++ F + + N+ +S L+ +WDAGS + SPLS V
Sbjct: 75 KEDDKYVLHGWQKVMSFQARDSSN-SKAGNDSTSKLSFKWDAGSCSSASSSAMYSPLSAV 133
Query: 401 DATVPAP 381
A AP
Sbjct: 134 SAPAKAP 140
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 29 ASLK*RNESIGSPTFSVGVFREERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 184
ASL N I +PT +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>08_02_1285 - 25881091-25881798
Length = 235
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 92 EERDGAGCSQAPPVRVQGAHTSGPG 166
EE DG G ++A V +GAH +G G
Sbjct: 173 EEEDGEGSAEAMEVEEEGAHLAGAG 197
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 29 ASLK*RNESIGSPTFSVGVFREERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 184
ASL+ N ++ +PT V ++ G S V + GAHT G + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +3
Query: 168 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 338
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 339 MCRGGRMFAPTKPWRRW 389
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 231 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 335
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>03_01_0147 - 1170481-1171260,1171332-1171511
Length = 319
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 23 GIASLK*R-NESIGSPTFSVGVFREERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 184
G ASL+ ++I +PTF++ + G +Q V + GAHT G C+ F
Sbjct: 139 GTASLEPEVADNIPAPTFTLDQLTQSFAAKGLTQEEMVTLSGAHTVGRAH-CTSF 192
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2
Query: 349 PRHMLPKAP*PDLWVPPPRTRGIRATARPVP 257
P H++P P P L P P+++ R P
Sbjct: 267 PHHIMPMTPQPQLQPPQPQSKEANTVVRAAP 297
>12_02_0488 +
19587337-19587648,19587739-19587798,19587876-19587941,
19588017-19588082,19588253-19588345
Length = 198
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 141 KAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 254
K ++ D N++ + SK R VSK H SAES
Sbjct: 80 KRKVQMDTENELMTNRSKEVRTKMSVSKACKHSVSAES 117
>11_06_0209 +
21282079-21282369,21287029-21287137,21287462-21287580,
21287722-21287829,21287943-21288062,21288838-21289011,
21289111-21289212
Length = 340
Score = 27.5 bits (58), Expect = 9.0
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +3
Query: 135 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRA---VARIPRVRGGG 305
VF PIR D+V+ V +K + ++ +Q GTGRA R P+ RGG
Sbjct: 160 VFDVPIRKDIVHRVGTHSTKTISEVSGTGRKPYNQK-----GTGRARHGTLRGPQFRGGA 214
Query: 306 T 308
T
Sbjct: 215 T 215
>11_01_0411 - 3114959-3115000,3115504-3116703
Length = 413
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 337 LPKAP*PDLWVPPPRTRGIRATARPVPHDSALV-W*PASL 221
+P P P LW+P P A P+ H S+L W P +L
Sbjct: 276 VPCPPAPPLWLPSPSVPSSLALHVPLFHASSLERWSPTAL 315
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +3
Query: 225 EAGHQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGRMFAPTKP-WR 383
E G ++ G++V + + R+R H G G+ G++ + GG+M P P WR
Sbjct: 74 EGGGSDKSKGSEVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGKMLRPGFPKWR 132
>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 557 CHLPEAPQAWSDILKVYKS 613
CHLPE WS++L++ +S
Sbjct: 1379 CHLPENDPMWSEVLRMKQS 1397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,707,041
Number of Sequences: 37544
Number of extensions: 416218
Number of successful extensions: 1606
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1604
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -