Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1143
         (549 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386           29   1.8  
11_04_0010 - 12139533-12139571,12140893-12141230,12141235-12141721     29   2.4  
10_08_1055 + 22587122-22587501,22587578-22588097                       28   5.6  
04_04_1019 + 30166514-30166585,30167207-30167841,30168505-301686...    28   5.6  
02_05_0410 + 28744716-28744841,28745361-28745965,28746151-287462...    28   5.6  
02_02_0363 + 9446055-9446524,9446658-9446771,9446856-9447281,944...    28   5.6  
01_06_0713 - 31402534-31403131,31403281-31403430,31403526-31403728     28   5.6  
09_04_0284 + 16384553-16384755,16384884-16385199,16385889-163859...    27   7.5  
01_06_0594 - 30473915-30474533,30474667-30474962                       27   7.5  

>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
          Length = 1066

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
 Frame = +2

Query: 197 SPKTGSTAFLSAINLRVRATL-----KVCCSYQLNVFASKFRDVM--YTPTLWKLTKIVC 355
           SP  G+ +FLS +NL     +      +   ++L +      D++     T+  LT++  
Sbjct: 94  SPHIGNLSFLSVLNLSNTGLMGSVPDDIGRLHRLKILDLGHNDMLGGVPATIGNLTRLDV 153

Query: 356 LAVKL*KSSSKYPVRIGLLENLLTFNVEIN 445
           L ++    S   PV + L  NL + N+++N
Sbjct: 154 LDLEFNSLSGPIPVELRLSHNLRSINIQMN 183


>11_04_0010 - 12139533-12139571,12140893-12141230,12141235-12141721
          Length = 287

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 118 YISSWVAHLRCRCLWASLAP*HQMGREIVYP 26
           Y+S WV  + CR  +A  A   QM  EI++P
Sbjct: 38  YVSKWVEAMPCRAAYAKHA--RQMFHEIIFP 66


>10_08_1055 + 22587122-22587501,22587578-22588097
          Length = 299

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 259 KGSPYPKVYGR*KSSRAC 206
           KGSPYP+ Y R  SS+ C
Sbjct: 166 KGSPYPRGYYRCSSSKGC 183


>04_04_1019 +
           30166514-30166585,30167207-30167841,30168505-30168645,
           30169604-30170300
          Length = 514

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 259 KGSPYPKVYGR*KSSRAC 206
           KGSPYP+ Y R  SS+ C
Sbjct: 277 KGSPYPRGYYRCSSSKGC 294


>02_05_0410 +
           28744716-28744841,28745361-28745965,28746151-28746270,
           28746597-28746737,28748626-28749370
          Length = 578

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 259 KGSPYPKVYGR*KSSRAC 206
           KGSPYP+ Y R  SS+ C
Sbjct: 325 KGSPYPRGYYRCSSSKGC 342


>02_02_0363 +
           9446055-9446524,9446658-9446771,9446856-9447281,
           9447812-9447893,9447964-9448020,9448633-9448881,
           9448978-9449109,9449163-9449291
          Length = 552

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 259 KGSPYPKVYGR*KSSRAC 206
           KGSPYP+ Y R  SS+ C
Sbjct: 189 KGSPYPRGYYRCSSSKGC 206


>01_06_0713 - 31402534-31403131,31403281-31403430,31403526-31403728
          Length = 316

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 259 KGSPYPKVYGR*KSSRAC 206
           KGSPYP+ Y R  SS+ C
Sbjct: 112 KGSPYPRGYYRCSSSKGC 129


>09_04_0284 +
           16384553-16384755,16384884-16385199,16385889-16385971,
           16386802-16386849,16387701-16387965,16388058-16388189,
           16388313-16388448,16388557-16388594
          Length = 406

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 304 KLGSKHVQLIRTTNFKGSPYPKVYGR*KSSRA 209
           ++ S+ ++L+R+TN +G PY     R  SSRA
Sbjct: 84  RIFSESLELVRSTNRRGLPYRLGINRRTSSRA 115


>01_06_0594 - 30473915-30474533,30474667-30474962
          Length = 304

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 259 KGSPYPKVYGR*KSSRAC 206
           KGSP+P+ Y R  SS+ C
Sbjct: 93  KGSPFPRAYYRCSSSKGC 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,616,416
Number of Sequences: 37544
Number of extensions: 248312
Number of successful extensions: 545
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)