Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1143
         (549 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-11|AAF51568.2| 2833|Drosophila melanogaster CG31973-PB,...    29   3.1  
BT009998-1|AAQ22467.1|  512|Drosophila melanogaster RE31155p pro...    29   4.1  
AE013599-3432|AAF46877.1|  512|Drosophila melanogaster CG4373-PA...    29   4.1  

>AE014134-11|AAF51568.2| 2833|Drosophila melanogaster CG31973-PB,
            isoform B protein.
          Length = 2833

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -1

Query: 438  STLNVNKFSKRPILTGYFEEDF*SLTARHTIFVSFHNVGVYITSRNLEANTF 283
            ST +V   ++RP +   +   +   TA HT+  S  N G YITS N  +  F
Sbjct: 2118 STEHVVAITERPTVKFLYSNKYRQQTAEHTLADSLQNSG-YITSPNGSSQKF 2168


>BT009998-1|AAQ22467.1|  512|Drosophila melanogaster RE31155p
           protein.
          Length = 512

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
 Frame = -1

Query: 345 FVSFHNVGVYITSRN--LEANTFS--**EQQTLRVALTRRFMADKKAVEPVFGLVDYVAP 178
           F SFH+ GVY+      L AN F+      + LR  LT  F + K  ++ +FG +D V  
Sbjct: 94  FASFHDRGVYVDEDKDPLSANLFNLRGASWRNLRQKLTPSFSSGK--IKGMFGTIDDVGD 151

Query: 177 HN**VQWFLNYIDYTETLELISQAGWHIYVVDVYG 73
               VQ     +D ++ +E+  +     Y VD+ G
Sbjct: 152 KL--VQHLEGALDQSDEVEI--KDVMTTYAVDIIG 182


>AE013599-3432|AAF46877.1|  512|Drosophila melanogaster CG4373-PA
           protein.
          Length = 512

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
 Frame = -1

Query: 345 FVSFHNVGVYITSRN--LEANTFS--**EQQTLRVALTRRFMADKKAVEPVFGLVDYVAP 178
           F SFH+ GVY+      L AN F+      + LR  LT  F + K  ++ +FG +D V  
Sbjct: 94  FASFHDRGVYVDEDKDPLSANLFNLRGASWRNLRQKLTPSFSSGK--IKGMFGTIDDVGD 151

Query: 177 HN**VQWFLNYIDYTETLELISQAGWHIYVVDVYG 73
               VQ     +D ++ +E+  +     Y VD+ G
Sbjct: 152 KL--VQHLEGALDQSDEVEI--KDVMTTYAVDIIG 182


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,897,890
Number of Sequences: 53049
Number of extensions: 437848
Number of successful extensions: 694
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2089831299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)