Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1143
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81036-2|CAD30433.1|  431|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z81036-1|CAB02742.1|  473|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AL132862-27|CAB60564.1|  682|Caenorhabditis elegans Hypothetical...    28   5.1  
AF291851-1|AAK55968.1|  103|Caenorhabditis elegans G protein sig...    27   8.9  

>Z81036-2|CAD30433.1|  431|Caenorhabditis elegans Hypothetical
           protein C16C2.2b protein.
          Length = 431

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 18/74 (24%), Positives = 35/74 (47%)
 Frame = +1

Query: 70  KPIDIYNVDVPPSLRYKF*GLSIVNIVKKPLNLLIMRRHVIDKSKNRLDCFFIGHKPSGK 249
           +P D  + ++P   R K  GLS+  +VK P+   ++   +  +  +    F+I  +   K
Sbjct: 266 QPTDTSSAEIPTEKRVKRWGLSVQELVKDPIGRQVLETFLESEFSSENIRFWIAIQDL-K 324

Query: 250 GYP*SLLFLSAERV 291
             P   ++  AER+
Sbjct: 325 YAPNEQIYQKAERI 338


>Z81036-1|CAB02742.1|  473|Caenorhabditis elegans Hypothetical
           protein C16C2.2a protein.
          Length = 473

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 18/74 (24%), Positives = 35/74 (47%)
 Frame = +1

Query: 70  KPIDIYNVDVPPSLRYKF*GLSIVNIVKKPLNLLIMRRHVIDKSKNRLDCFFIGHKPSGK 249
           +P D  + ++P   R K  GLS+  +VK P+   ++   +  +  +    F+I  +   K
Sbjct: 266 QPTDTSSAEIPTEKRVKRWGLSVQELVKDPIGRQVLETFLESEFSSENIRFWIAIQDL-K 324

Query: 250 GYP*SLLFLSAERV 291
             P   ++  AER+
Sbjct: 325 YAPNEQIYQKAERI 338


>AL132862-27|CAB60564.1|  682|Caenorhabditis elegans Hypothetical
           protein Y73F8A.35 protein.
          Length = 682

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 475 IKARYHRPAYFCREAVMRFGLKD 543
           IK+ YHRP  FCR  +  F  +D
Sbjct: 626 IKSEYHRPYCFCRNQINVFYAQD 648


>AF291851-1|AAK55968.1|  103|Caenorhabditis elegans G protein
           signaling regulator EAT-16 protein.
          Length = 103

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 70  KPIDIYNVDVPPSLRYKF*GLSIVNIVKKPLNLLIM 177
           +P D  + ++P   R K  GLS+  +VK P+   ++
Sbjct: 66  QPTDTSSAEIPTEKRVKRWGLSVQELVKDPIGRQVL 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,944,267
Number of Sequences: 27780
Number of extensions: 232799
Number of successful extensions: 545
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)