Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1142
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...   103   1e-23
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   3.5  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    26   3.5  

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score =  103 bits (247), Expect = 1e-23
 Identities = 49/76 (64%), Positives = 61/76 (80%)
 Frame = -2

Query: 402 DKLTVARARKIQRFLSQPFQVAKVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYM 223
           DKLTV RARK+QRFLSQPF VA+VFTG  G+LV L++TI+ F +IL G +D LPE AFYM
Sbjct: 446 DKLTVERARKVQRFLSQPFAVAEVFTGIEGRLVSLKDTIRSFKEILEGKHDSLPESAFYM 505

Query: 222 VGPIEEVVAKAETLAK 175
           VG I++ V KAE +A+
Sbjct: 506 VGSIDDAVKKAEKIAQ 521



 Score = 45.6 bits (103), Expect = 4e-06
 Identities = 22/28 (78%), Positives = 25/28 (89%)
 Frame = -1

Query: 490 ARGVQKILQDYKSLQGIIAILGMDELSE 407
           A  VQ++LQ+YKSLQ IIAILGMDELSE
Sbjct: 417 AGSVQQMLQEYKSLQDIIAILGMDELSE 444


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -2

Query: 246 LPEVAFYMVGPIEEVVAKAETLAKNA*TGQYCVIILKSCRVIY*K 112
           LP + +Y+ GP + V AK+  +  N     +C+ +++S R ++ K
Sbjct: 373 LPPIDYYLNGPYDNVEAKSALM--NI-YSSHCITLIESVRYMHLK 414


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 272 LENPLMVSSSGTSLPACPVNTLATWKG 352
           L  PL+   +G   PA PVN LA W G
Sbjct: 673 LNGPLIFGGTGYIPPATPVNYLA-WSG 698


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,889,391
Number of Sequences: 5004
Number of extensions: 36020
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)