Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1142
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1201 + 24791588-24792619                                         29   2.6  
02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677...    28   4.6  
02_01_0150 + 1063732-1064214,1064290-1064355,1064721-1064803,106...    28   4.6  

>07_03_1201 + 24791588-24792619
          Length = 343

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
 Frame = -2

Query: 459 TNPCRALLLFWVWTSYLKEDKLTVARARKIQRFLSQPFQVAKVFTGHAGKLVPL--EETI 286
           + P R LLL +     L  D       R + RF+ +PF  A+   G    +V L   E +
Sbjct: 227 SRPDRVLLLRY---EDLLRDGAAGEHVRAMARFMGRPFSAAEEAAGAVASVVELCSFERM 283

Query: 285 KGFS---KILAGDYDHLPEVAFYMVG 217
           K      +  AG Y  +P  AF+  G
Sbjct: 284 KALEVNRRGTAGSYKSMPRDAFFRKG 309


>02_02_0099 +
           6768115-6768285,6769950-6770034,6770501-6770628,
           6771429-6771465,6773108-6774193,6774337-6774447,
           6774701-6774817,6774818-6775120,6776092-6776513,
           6776645-6777274
          Length = 1029

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 285 KGFSKILAGD--YDHLPEVAFYMVGPIEEVVAK 193
           KG  +++AG   + H     FYM+ P EEVV K
Sbjct: 163 KGTERLVAGAQLFGHSTRQPFYMIQPSEEVVQK 195


>02_01_0150 +
           1063732-1064214,1064290-1064355,1064721-1064803,
           1065100-1065155,1065247-1066061
          Length = 500

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 336 KVFTGHAGKLVPLEETIKGFSKILAGD 256
           K+    AG LVP+E  +K  SKI AG+
Sbjct: 225 KIHMSGAGNLVPMEIALKVASKIAAGE 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,404,776
Number of Sequences: 37544
Number of extensions: 215410
Number of successful extensions: 380
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)