Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1142
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...   123   6e-29
AC006632-2|AAK85468.1|  478|Caenorhabditis elegans Hypothetical ...    28   4.2  
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z48045-1|CAA88103.2|  630|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AF067623-1|AAC17553.2|  640|Caenorhabditis elegans Hypothetical ...    27   9.7  

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score =  123 bits (297), Expect = 6e-29
 Identities = 59/78 (75%), Positives = 67/78 (85%)
 Frame = -2

Query: 408 KEDKLTVARARKIQRFLSQPFQVAKVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAF 229
           +EDKLTV+RARKIQRFLSQPFQVA+VFTGH GK V LEETI+GF+ IL G+ DHLPEVAF
Sbjct: 457 EEDKLTVSRARKIQRFLSQPFQVAEVFTGHQGKFVSLEETIRGFTMILKGELDHLPEVAF 516

Query: 228 YMVGPIEEVVAKAETLAK 175
           YM G I++V  KAE LAK
Sbjct: 517 YMQGGIDDVFKKAEELAK 534



 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 27/28 (96%), Positives = 27/28 (96%)
 Frame = -1

Query: 490 ARGVQKILQDYKSLQGIIAILGMDELSE 407
           ARGVQKILQDYKSLQ IIAILGMDELSE
Sbjct: 430 ARGVQKILQDYKSLQDIIAILGMDELSE 457


>AC006632-2|AAK85468.1|  478|Caenorhabditis elegans Hypothetical
           protein F28A10.2 protein.
          Length = 478

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 489 HVEFRKFFRTTNPCRALLLFWVWTSYLKEDKLT-VARA 379
           H++FR F    N     L  W+W S +  D +  +ARA
Sbjct: 220 HLKFRLFSYEVNGLNRSLFSWIWPSSISHDLVDGIARA 257


>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
           protein C34F6.1 protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 476 ENSSGLQIPAGHYCYFG 426
           ENS+G +  AGH+C+ G
Sbjct: 424 ENSNGTECSAGHWCHIG 440


>Z48045-1|CAA88103.2|  630|Caenorhabditis elegans Hypothetical
           protein C41C4.3 protein.
          Length = 630

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 330 FTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAF 229
           F   + KL+ L       S I AG +DH  E+ F
Sbjct: 361 FLSKSSKLISLTLQCNSISSIAAGAFDHFTELQF 394


>AF067623-1|AAC17553.2|  640|Caenorhabditis elegans Hypothetical
           protein T26C12.1 protein.
          Length = 640

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = -2

Query: 438 LLFWVWTSYLKEDKLT----VARARKIQRFLSQPFQVAKVFTGHAGKLV 304
           LL W W      D+LT    +  +   Q  LS  FQV +    H G+LV
Sbjct: 14  LLLWKWLDVRSTDELTSMVKLLGSGNGQHVLSNAFQVDEKSKRHGGELV 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,430,484
Number of Sequences: 27780
Number of extensions: 208151
Number of successful extensions: 441
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)