Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1136
(450 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 121 6e-29
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 97 1e-21
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 57 1e-09
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo... 35 0.007
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 29 0.33
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 2.3
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex... 26 2.3
SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 2.3
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.1
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 3.1
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 4.1
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 4.1
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 25 7.1
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 25 7.1
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 25 7.1
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe... 24 9.4
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 24 9.4
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 121 bits (291), Expect = 6e-29
Identities = 63/137 (45%), Positives = 88/137 (64%), Gaps = 2/137 (1%)
Frame = +2
Query: 8 EKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVF 187
E V+ +++ V KYK+AG++ V+++V+ C P A +IC GD+L+ E KV+
Sbjct: 9 ETAVDYSLSNPETVNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELLNEAIKKVY 68
Query: 188 KKEKDSKKGIAFSTCVSVNNCICHFSPIASEPD--YILKKGDLAKIDLGAHIDGFIAVVA 361
+ KD+ KGIAF T VS N+ H SP+ S+P+ LK GD+ KI LGAHIDGF ++VA
Sbjct: 69 RT-KDAYKGIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILLGAHIDGFASLVA 127
Query: 362 HTVVVGESEVSGRAADV 412
T VV E V+G AADV
Sbjct: 128 TTTVVSEEPVTGPAADV 144
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 96.7 bits (230), Expect = 1e-21
Identities = 46/130 (35%), Positives = 78/130 (60%), Gaps = 6/130 (4%)
Frame = +2
Query: 5 DEKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKV 184
D + + + +KY+ AG +V++ QV ++CVP AS REI +GD L+ E + +
Sbjct: 4 DPSDSNSRVVDASQFSKYRDAGALVSKAFHQVASRCVPGASTREISSYGDNLLHEYKSSI 63
Query: 185 FKKEKDSKKGIAFSTCVSVNNCICHFSP------IASEPDYILKKGDLAKIDLGAHIDGF 346
+K ++ +KGIA T + VNNC +++P ++ Y L+ GD+ KI +G H DG+
Sbjct: 64 YKSQR-FEKGIAEPTSICVNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFDGY 122
Query: 347 IAVVAHTVVV 376
A+++HT+VV
Sbjct: 123 TALISHTIVV 132
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 57.2 bits (132), Expect = 1e-09
Identities = 27/69 (39%), Positives = 42/69 (60%)
Frame = +2
Query: 164 LEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDG 343
+E T + +E K GI F T VS+N+C H++P A + ILK+ D+ K+D+G H++G
Sbjct: 148 IENTTRALVEEDGLKSGIGFPTGVSLNHCAAHYTPNAGDTT-ILKEKDVMKVDIGVHVNG 206
Query: 344 FIAVVAHTV 370
I A T+
Sbjct: 207 RIVDSAFTM 215
>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 34.7 bits (76), Expect = 0.007
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +2
Query: 224 STCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGE 382
S C SVN ICH P P L+ GD+ ID+ + +GF + T VG+
Sbjct: 181 SVCTSVNEIICHGIP-DQRP---LEDGDIVNIDVSLYHNGFHGDLNETYYVGD 229
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 29.1 bits (62), Expect = 0.33
Identities = 11/30 (36%), Positives = 22/30 (73%)
Frame = -2
Query: 308 NLLFSECNPVRSQWAKSDKCSCSQKRMLKM 219
+L+ S+C V+ QW+ ++CSCS + +L++
Sbjct: 2135 DLICSKCKTVK-QWSLKERCSCSGEWVLQL 2163
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 2.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 111 AFQTHQQEKYVNLAINLYWRRLTRFSKRRKTP 206
AF T +Q Y N NLY+ ++ S R TP
Sbjct: 474 AFPTSRQNAYYNDPWNLYFIHFSKLSPLRFTP 505
>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 95
Score = 26.2 bits (55), Expect = 2.3
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 5 DEKEV-EKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPD 121
D+K + K I ++L V + AG++++++ E KC+P+
Sbjct: 16 DKKSIFMKQIRQELAVAQ---AGELISKINENCFDKCIPE 52
>SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 117
Score = 26.2 bits (55), Expect = 2.3
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -3
Query: 448 KSRFTSMMSCQQNICSTSRDFTFTHNYCMSYNSYKSINVST 326
K+ + M + C S +T + N C +Y + SIN T
Sbjct: 32 KTIYFGMKAYDDVNCKGSTSYTISFNKCQAYPNINSINALT 72
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 3.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 370 YCMSYNSYKSINVSTKIYLG*ISF 299
YC +YKS+ + T +Y+G F
Sbjct: 144 YCRKVLTYKSLGIRTAVYVGAFCF 167
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 3.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 160 KFIAKFTYFSC*CVWNAFCDDLLKDSVHYLSC*LV 56
K + KF+ C +++A C+D L S H C +V
Sbjct: 472 KCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVV 506
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.4 bits (53), Expect = 4.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 122 ASAREICEFGDKLVLEETNKVFKKEKD 202
++ +E FG+KL E T K+ EKD
Sbjct: 865 SNLQEKINFGNKLAKEHTEKISSLEKD 891
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 25.4 bits (53), Expect = 4.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 278 EPDYILKKGDLAKIDLGAHIDGFIAVVAHTVV 373
EP+Y+L G+L+ +L ID F T V
Sbjct: 382 EPEYLLMYGNLSNEELVERIDAFYMNARRTYV 413
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 24.6 bits (51), Expect = 7.1
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -1
Query: 249 QLFTETHVENAMPF--LESFSFLKTLLVSSNTSLSPNSHISLADASGTHFAMTCSRTRFT 76
++F + A+PF + SF+ + +S +S+ + AS F C +T+F
Sbjct: 351 KIFQKYESSEAVPFCIILCGSFMSSAFHNSGSSIQYKEGFNKLAASLEKFPKICEKTKFI 410
Query: 75 ICP 67
P
Sbjct: 411 FVP 413
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 24.6 bits (51), Expect = 7.1
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 138 ISLADASGTHFAMTCSRTRFTICPANLYLVT 46
+SL + G+ FA+ C R + +C A L++
Sbjct: 725 LSLLNDDGSSFALKCIRIKHYMCWAGAQLIS 755
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 24.6 bits (51), Expect = 7.1
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +2
Query: 59 KLAGQIVNRVLEQVIAKCVPDASAREICE----FGDKLVLEETNKVFKKEKDSKKGIAFS 226
+ A +VN + EQV + V S + E DKL L++ V D+ +AF
Sbjct: 537 EFASILVNVLYEQVSLRSVICNSLTALVETNSKVADKLPLDDVISVPVSASDASSNLAFL 596
Query: 227 TCVSVN 244
T +S N
Sbjct: 597 TNMSSN 602
>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 405
Score = 24.2 bits (50), Expect = 9.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 376 HNYCMSYNSYKSINVSTKI 320
HN ++YN Y+ +NV T +
Sbjct: 36 HNLVVNYNLYEKLNVITPV 54
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 24.2 bits (50), Expect = 9.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 246 LFTETHVENAMPFLESFSFLKTLLVSSNTS 157
L+ T +EN F+E + TL+ SSN +
Sbjct: 678 LYLSTFLENNKSFIEGLNSPNTLIGSSNVA 707
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,785,433
Number of Sequences: 5004
Number of extensions: 35659
Number of successful extensions: 141
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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