Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1133
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    28   1.4  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    27   3.2  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    27   4.2  
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.5  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    26   5.5  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   5.5  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    26   5.5  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   9.6  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   9.6  

>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +2

Query: 572 CKVDNDNNAYWSCTQDTCMMSEDLVNDVNQQGTTWRATTYPEFNEKKLKDGLIYKL 739
           C  D+++      T +   + ED+   +  +GT       PEFN+   ++GL Y +
Sbjct: 251 CVKDDESCEKIRLTLENTNIDEDITQMIQNEGTGTTIPPLPEFNDYFKENGLNYDI 306


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +2

Query: 581 DNDNNAYWSCTQDTCMMSEDLVNDVNQQGTTWRATTYPEFNEKKLKDGLIYKLGT 745
           DN+++ Y  C      M + + ND+ ++   WRA       ++++ + L+  L T
Sbjct: 243 DNNSHLYGICVVVWVAMPQSMQNDLEKECEVWRANN-TTVEDREVAEKLLSSLET 296


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = -1

Query: 560 CSLC*LDRPVHKSVARIRTILRLSEVGCILSCNRDSSHRGVLCDHRTRRNSREYPISALS 381
           C  C   RP  K +     I RL ++  ++  NR S H G L   R RR+   YP+  L+
Sbjct: 713 CPGCKAFRPATKRLE----IWRLPKI-LVIHLNRFSGHGGDLRRRRKRRDLVVYPVFDLN 767

Query: 380 NRLF 369
            + F
Sbjct: 768 LKQF 771


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/47 (23%), Positives = 26/47 (55%)
 Frame = -2

Query: 655 NVVHQVLAHHARVLSARPIRVVVIIDLTCTQIAAFVNLIVRCISLLL 515
           N + +++    + L  RP+ V ++    CT  +A+V+ ++ C+  +L
Sbjct: 115 NSLQKIIKTLEKELDYRPVSVQLVDAYCCTNPSAYVSALLVCLKGML 161


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 710 KLKDGLIYKLGTFPLNVTVISYSKD 784
           KL   L++KL T   N+ V S SKD
Sbjct: 392 KLNSNLLFKLQTLNRNIKVTSQSKD 416


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +2

Query: 458  PDYKKVCSPPQITSVSCEYEQQTYAPDDQVNKGCNL 565
            P+ K +C   +I  +    +  +Y  ++++N GC L
Sbjct: 1199 PEEKYICQEGEIGEIWINGKHGSYCENNELNSGCEL 1234


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = +2

Query: 581 DNDNNAYWSCTQDTCMMSEDLVNDVNQQGTTWRATTYPEFNEKKLKD 721
           DN   A  S      + S     DV+   TTW  T+ P F   K  D
Sbjct: 168 DNHRGASSSAVSKDGLASPRPTKDVDADDTTWYFTSSPSFQPLKDSD 214


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -3

Query: 213 KQPKNFGTPKMSTKII*FRKELKIIQCYEIIIRRV 109
           ++P+NF   K   K +  +KE+K ++  ++ IR++
Sbjct: 255 EKPRNFRREKFLKKFLAMQKEIKYLRKRKLQIRKI 289


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 685 CSSPSGPLLVNVVHQV 638
           CSSP+GP LV V  Q+
Sbjct: 545 CSSPNGPNLVGVTQQM 560


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,231,821
Number of Sequences: 5004
Number of extensions: 68027
Number of successful extensions: 184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)