Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1133
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.83 
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    24   1.4  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    24   1.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.5  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   4.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   7.7  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 638 PRSSCTCLECTTNTRCC 588
           P   C C  C + T+CC
Sbjct: 431 PPIGCECKTCNSKTKCC 447



 Score = 22.2 bits (45), Expect = 5.8
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +2

Query: 329 CAARPDDNKCCYNRKDDCSVPILGTLCY-CDEFCD 430
           C    DD  C Y  K    VP  GT  Y C++ C+
Sbjct: 446 CCFAQDDGLCPYTLKHKIRVP-PGTPIYECNKRCN 479


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 443 HDDCCPDYKKVCSPPQITSV 502
           HDD   +Y     PP+ITSV
Sbjct: 78  HDDSDEEYAANSQPPRITSV 97


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 287 CLAYSGPELLNGRYCAARPDDNKCC 361
           CL + GP ++N  +C   P  +  C
Sbjct: 45  CLPFCGPNVINPFFCDMSPSLSLLC 69


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 647 SPGPRSSCTCLEC 609
           +P   SSC+CL+C
Sbjct: 319 TPSQASSCSCLDC 331


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 660  WLTSFTRSSLIMHVS*VHDQYALLSLSTLH 571
            ++TS T SS+++H    H+  A L+  TLH
Sbjct: 1411 YVTSSTSSSILLHWKSGHNGGASLTGYTLH 1440


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 660  WLTSFTRSSLIMHVS*VHDQYALLSLSTLH 571
            ++TS T SS+++H    H+  A L+  TLH
Sbjct: 1407 YVTSSTSSSILLHWKSGHNGGASLTGYTLH 1436


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 287 CLAYSGPELLNGRYCAARP 343
           CL + GP ++N  +C   P
Sbjct: 44  CLPFCGPNVINPFFCDMSP 62


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = -2

Query: 490 LRWAAYFLVIGTAVIVVSCVI 428
           + W ++F+VI T +I++  ++
Sbjct: 408 IEWLSFFIVIFTYIIILITLV 428


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,024
Number of Sequences: 438
Number of extensions: 5301
Number of successful extensions: 25
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)