Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1132
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138...    29   2.6  
04_04_0657 + 27000894-27001094,27001188-27001544,27002387-27002581     29   2.6  
01_06_1127 - 34699119-34699360,34699446-34699689,34699773-346998...    28   6.0  

>07_03_1772 +
           29411874-29413218,29413355-29413421,29413749-29413896,
           29415293-29415416,29416340-29416590,29416923-29418449,
           29418786-29418896,29419576-29419734,29419827-29421734
          Length = 1879

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +1

Query: 400 QKQVAICNYVCN*VVFLSIDNIGKHS*LHITQPIKTSSSSACISPLLDVNLSH 558
           +K V   N+    VV   +D + +H+ +  TQ  +  SSS+  SPLL + +++
Sbjct: 500 EKPVTTRNHAYAEVVVFVLDQMTRHTQVTSTQRKQARSSSSSASPLLSLRITY 552


>04_04_0657 + 27000894-27001094,27001188-27001544,27002387-27002581
          Length = 250

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +1

Query: 391 FFCQKQVAICNYVCN*VVFLSIDNIGKHS*LHITQPIKTSSSSACISPLLDV 546
           F C  + A+C+  C+  V  +    GKH    + QP+  SSSSA   PL D+
Sbjct: 16  FCCADEAALCD-ACDRRVHSANKLAGKHRRFSLLQPLA-SSSSAQKPPLCDI 65


>01_06_1127 - 34699119-34699360,34699446-34699689,34699773-34699844,
            34700123-34700218,34700322-34700438,34700520-34700676,
            34700770-34700867,34700940-34701098,34701169-34701339,
            34701402-34701479,34701548-34701667,34701968-34702085,
            34702216-34702346,34702452-34702528,34702858-34702969,
            34703057-34703239,34703416-34703517,34703617-34703718,
            34703817-34703912,34704481-34704558,34704652-34704744,
            34704817-34704938,34705035-34705116,34705204-34705278,
            34705385-34705645,34705730-34705854,34705956-34706031,
            34706128-34706277,34706359-34706454,34706707-34706814,
            34706956-34707056,34707727-34707814,34707894-34708006,
            34708278-34708383,34709143-34709247,34709356-34709427,
            34709931-34709971,34710067-34710175,34710252-34710317,
            34710404-34710540,34710788-34710890,34711416-34711535,
            34711707-34711820,34711923-34712008,34712088-34712170,
            34713283-34713347,34713444-34713621,34713697-34713776,
            34714926-34715049,34715140-34715245,34715399-34715561
          Length = 1966

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -1

Query: 681  QFQKEF*NNLKVLFK*VADDLWQYAGK--NWMRK-VEDRSMWR 562
            + +K   N L   +K + DD+W+Y GK  +  R  ++DR  W+
Sbjct: 1324 EIRKAALNTLATAYKNLGDDVWRYVGKLSDAQRSMLDDRFKWK 1366


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,849,343
Number of Sequences: 37544
Number of extensions: 356922
Number of successful extensions: 929
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)