Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1130
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 30 0.31
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 28 0.96
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc... 28 0.96
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 3.9
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 26 5.1
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 5.1
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 25 6.8
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 6.8
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 25 9.0
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas... 25 9.0
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 29.9 bits (64), Expect = 0.31
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = -3
Query: 466 VQQFDIDAPEASTDAVQEHGETAECNETGHHKSRVQVELLV 344
++QF+ D + V GET + E+ HHKSR+ +EL+V
Sbjct: 715 LKQFERDHIPLKDELVTITGETTDLQESMHHKSRM-LELVV 754
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 28.3 bits (60), Expect = 0.96
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 449 YVKLLHAIFHALAFPCIVIGFLAVLDYHNKK 541
++KL F+ AF C ++ FL L Y N K
Sbjct: 439 FIKLNIRTFYLTAFLCALLNFLRYLKYRNSK 469
>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 28.3 bits (60), Expect = 0.96
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 120 QYKH*SKNNTKLTQYKNTKFEKLKFEIKNLAASCHM 13
++ H + NN L KNT +E+ + ++K+ A HM
Sbjct: 29 RFAHHTSNNDDLEVKKNTVYERYERKLKSKAEELHM 64
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 440 RRIYVKLLHAIFHALAFPC--IVIGFLAVLDYHNKKGINNFYSLHSWI 577
RR ++ ++ + L F + G LA H+K + N Y++ SW+
Sbjct: 218 RRTFLATMNILAQTLGFMAGPFLGGILAKATIHSKNAVWNQYTVASWV 265
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 5.1
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = -1
Query: 432 RQMRYKSTEKPQNVTKPATIRVGCKLNCLSGVSSAQA*PPR**NTQKMVRAETPMSST 259
++ + ++ + P++V+K K SS+ NT+K V+ ETP++ST
Sbjct: 195 KEAKRENAKVPKDVSKKEAKTTKSKEKATKKTSSSVPKQSTGENTKKAVKLETPLTST 252
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 603 PNSPMATKPIQLWSE*KLLMP 541
PNSP A+K + L SE K L+P
Sbjct: 1007 PNSPRASKRVSLDSEDKKLVP 1027
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 419 YRICRCFRRIYVKLLHAIFHALAFPCIVIGFLAVLDYHNKKGINNFYSL 565
Y I R + ++L A H + FP V +L +L + + FY L
Sbjct: 61 YTILRDWVDSSLELYKAELHRILFPIFVHSYLNLLSQDHYEAAKQFYEL 109
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 96 NTKLTQYKNTKFEKLKFEIKNLAASC 19
NT++ Y+N+ +LK E L SC
Sbjct: 61 NTEVNLYRNSSVNELKIEALTLIQSC 86
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 127 EDLNKKKHGKRK 162
EDL KK+HGKRK
Sbjct: 350 EDLWKKRHGKRK 361
>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 25.0 bits (52), Expect = 9.0
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 501 TMHGNANAWKMAC 463
T +GNAN WK C
Sbjct: 129 TKYGNANVWKYCC 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,502,833
Number of Sequences: 5004
Number of extensions: 48113
Number of successful extensions: 149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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