Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1130
(627 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z27080-2|CAA81603.1| 266|Caenorhabditis elegans Hypothetical pr... 96 2e-20
AF016424-3|AAB65330.1| 251|Caenorhabditis elegans Hypothetical ... 69 4e-12
AF016424-4|AAT68893.1| 152|Caenorhabditis elegans Hypothetical ... 62 2e-10
AF016424-5|AAB65326.1| 282|Caenorhabditis elegans Hypothetical ... 42 4e-04
Z81593-3|CAB04741.1| 332|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z68760-12|CAD27623.1| 436|Caenorhabditis elegans Hypothetical p... 29 3.6
Z68760-11|CAA92997.2| 438|Caenorhabditis elegans Hypothetical p... 29 3.6
X68070-1|CAA48207.1| 438|Caenorhabditis elegans Lin-3 protein. 29 3.6
AL032641-6|CAD27613.1| 436|Caenorhabditis elegans Hypothetical ... 29 3.6
AL032641-5|CAA21649.2| 438|Caenorhabditis elegans Hypothetical ... 29 3.6
U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family... 28 6.3
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family... 28 6.3
AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical ... 28 6.3
AF038615-5|AAB94142.1| 934|Caenorhabditis elegans Hypothetical ... 28 6.3
Z81568-10|CAB04600.1| 441|Caenorhabditis elegans Hypothetical p... 27 8.3
U41038-3|AAK29708.3| 623|Caenorhabditis elegans Cadherin family... 27 8.3
AC006655-1|AAF39875.1| 391|Caenorhabditis elegans Serpentine re... 27 8.3
>Z27080-2|CAA81603.1| 266|Caenorhabditis elegans Hypothetical
protein F55H2.5 protein.
Length = 266
Score = 96.3 bits (229), Expect = 2e-20
Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 9/137 (6%)
Frame = +2
Query: 242 VITLATVLLIGVSALTI-FWVFYYRGGYAWADDTPDKQFNLHPTLMVAGFVTFCGFSVLL 418
+I + + + G++ L + W+ + G+AW +D PDK+FN HPT M+ G V G ++L+
Sbjct: 23 IILVMSQVFGGLAVLLVTIWMSKFESGFAWNED-PDKEFNYHPTFMIMGMVFLFGEALLV 81
Query: 419 YRICRCFRRIYVKLLHAIFHALAFPCIVIGFLAVLDYH--------NKKGINNFYSLHSW 574
YR+ R R+ + K LH I H+ +++ AV DYH N I N SLHSW
Sbjct: 82 YRVFRNERKKFSKTLHVILHSCVLVFMLMALKAVFDYHNLHKDPSGNPAPIVNLVSLHSW 141
Query: 575 IGFVAMGLFGLQYAVGF 625
IG + L+ QY VGF
Sbjct: 142 IGLSVVILYFAQYIVGF 158
>AF016424-3|AAB65330.1| 251|Caenorhabditis elegans Hypothetical
protein F39G3.5a protein.
Length = 251
Score = 68.5 bits (160), Expect = 4e-12
Identities = 32/89 (35%), Positives = 49/89 (55%)
Frame = +2
Query: 359 LHPTLMVAGFVTFCGFSVLLYRICRCFRRIYVKLLHAIFHALAFPCIVIGFLAVLDYHNK 538
LH LM+ F+ F G ++L YR+ R +I KLLH H +A + ++ N
Sbjct: 66 LHAFLMILAFIYFQGEALLAYRLYRYDAKIISKLLHTALHIIAIGLGITALTVIIMSTNN 125
Query: 539 KGINNFYSLHSWIGFVAMGLFGLQYAVGF 625
G NNF S+HSWIG + ++ +Q++ GF
Sbjct: 126 AGWNNFTSVHSWIGICLLSVYLVQFSFGF 154
>AF016424-4|AAT68893.1| 152|Caenorhabditis elegans Hypothetical
protein F39G3.5b protein.
Length = 152
Score = 62.5 bits (145), Expect = 2e-10
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +2
Query: 359 LHPTLMVAGFVTFCGFSVLLYRICRCFRRIYVKLLHAIFHALAFPCIVIGFLAVLDYHNK 538
LH LM+ F+ F G ++L YR+ R +I KLLH H +A + ++ N
Sbjct: 66 LHAFLMILAFIYFQGEALLAYRLYRYDAKIISKLLHTALHIIAIGLGITALTVIIMSTNN 125
Query: 539 KGINNFYSLHSWIGFVAMGLFGLQ 610
G NNF S+HSWIG + ++ +Q
Sbjct: 126 AGWNNFTSVHSWIGICLLSVYLVQ 149
>AF016424-5|AAB65326.1| 282|Caenorhabditis elegans Hypothetical
protein F39G3.4 protein.
Length = 282
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/89 (25%), Positives = 42/89 (47%)
Frame = +2
Query: 359 LHPTLMVAGFVTFCGFSVLLYRICRCFRRIYVKLLHAIFHALAFPCIVIGFLAVLDYHNK 538
LH LM GF+ G ++L YR+ R L+H H + V +++
Sbjct: 98 LHGFLMFLGFIYLQGEALLSYRVYRFTTNRVSILIHTFLHIASIVLAVGALFSIILTIKY 157
Query: 539 KGINNFYSLHSWIGFVAMGLFGLQYAVGF 625
G ++F ++HS++G + ++ Q + GF
Sbjct: 158 TGASHFSNIHSYLGVCLLLVYSGQLSFGF 186
>Z81593-3|CAB04741.1| 332|Caenorhabditis elegans Hypothetical
protein T20B3.3 protein.
Length = 332
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +2
Query: 431 RCFRRIYVKLLHAIFHALAFPCIVIGFLAVLDYHNKKGINN----FYSLHSWIGFVAM 592
R F+R ++ L F + P IGF A+ DYHN + NN S H + +AM
Sbjct: 237 RKFQRAFILQLLIPFLIVFVPLGYIGFTAIFDYHN-QFFNNLTLIIISSHGFFSTIAM 293
>Z68760-12|CAD27623.1| 436|Caenorhabditis elegans Hypothetical
protein F36H1.4b protein.
Length = 436
Score = 28.7 bits (61), Expect = 3.6
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
Frame = -3
Query: 514 QEADNDARER*RVEDGVQQFDIDAPEASTDAVQEHGET---AECNETGHHKSRVQVELLV 344
++ D + E + + Q DA AV++ E A+C + HH + VE++
Sbjct: 112 EKVDEEVEEALKYNEDATQ---DATSTLKPAVRKEIEKLKEAKCKDYCHHNATCHVEVIF 168
Query: 343 RGVVGPGIAPAVIEHPEDGQSGDANEQHRRQSDHEGILAPLAGTSLVVVRVIGPTALVLI 164
R + P+ H G G ++H Q+ AP+ G V + + TA +L+
Sbjct: 169 REDRVSAVVPSC--HCPQGWEGTRCDRHYVQA----FYAPINGRYNVRLSTMSSTAQLLV 222
Query: 163 LSS 155
S
Sbjct: 223 QQS 225
>Z68760-11|CAA92997.2| 438|Caenorhabditis elegans Hypothetical
protein F36H1.4a protein.
Length = 438
Score = 28.7 bits (61), Expect = 3.6
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
Frame = -3
Query: 514 QEADNDARER*RVEDGVQQFDIDAPEASTDAVQEHGET---AECNETGHHKSRVQVELLV 344
++ D + E + + Q DA AV++ E A+C + HH + VE++
Sbjct: 114 EKVDEEVEEALKYNEDATQ---DATSTLKPAVRKEIEKLKEAKCKDYCHHNATCHVEVIF 170
Query: 343 RGVVGPGIAPAVIEHPEDGQSGDANEQHRRQSDHEGILAPLAGTSLVVVRVIGPTALVLI 164
R + P+ H G G ++H Q+ AP+ G V + + TA +L+
Sbjct: 171 REDRVSAVVPSC--HCPQGWEGTRCDRHYVQA----FYAPINGRYNVRLSTMSSTAQLLV 224
Query: 163 LSS 155
S
Sbjct: 225 QQS 227
>X68070-1|CAA48207.1| 438|Caenorhabditis elegans Lin-3 protein.
Length = 438
Score = 28.7 bits (61), Expect = 3.6
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
Frame = -3
Query: 514 QEADNDARER*RVEDGVQQFDIDAPEASTDAVQEHGET---AECNETGHHKSRVQVELLV 344
++ D + E + + Q DA AV++ E A+C + HH + VE++
Sbjct: 114 EKVDEEVEEALKYNEDATQ---DATSTLKPAVRKEIEKLKEAKCKDYCHHNATCHVEVIF 170
Query: 343 RGVVGPGIAPAVIEHPEDGQSGDANEQHRRQSDHEGILAPLAGTSLVVVRVIGPTALVLI 164
R + P+ H G G ++H Q+ AP+ G V + + TA +L+
Sbjct: 171 REDRVSAVVPSC--HCPQGWEGTRCDRHYVQA----FYAPINGRYNVRLSTMSSTAQLLV 224
Query: 163 LSS 155
S
Sbjct: 225 QQS 227
>AL032641-6|CAD27613.1| 436|Caenorhabditis elegans Hypothetical
protein F36H1.4b protein.
Length = 436
Score = 28.7 bits (61), Expect = 3.6
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
Frame = -3
Query: 514 QEADNDARER*RVEDGVQQFDIDAPEASTDAVQEHGET---AECNETGHHKSRVQVELLV 344
++ D + E + + Q DA AV++ E A+C + HH + VE++
Sbjct: 112 EKVDEEVEEALKYNEDATQ---DATSTLKPAVRKEIEKLKEAKCKDYCHHNATCHVEVIF 168
Query: 343 RGVVGPGIAPAVIEHPEDGQSGDANEQHRRQSDHEGILAPLAGTSLVVVRVIGPTALVLI 164
R + P+ H G G ++H Q+ AP+ G V + + TA +L+
Sbjct: 169 REDRVSAVVPSC--HCPQGWEGTRCDRHYVQA----FYAPINGRYNVRLSTMSSTAQLLV 222
Query: 163 LSS 155
S
Sbjct: 223 QQS 225
>AL032641-5|CAA21649.2| 438|Caenorhabditis elegans Hypothetical
protein F36H1.4a protein.
Length = 438
Score = 28.7 bits (61), Expect = 3.6
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
Frame = -3
Query: 514 QEADNDARER*RVEDGVQQFDIDAPEASTDAVQEHGET---AECNETGHHKSRVQVELLV 344
++ D + E + + Q DA AV++ E A+C + HH + VE++
Sbjct: 114 EKVDEEVEEALKYNEDATQ---DATSTLKPAVRKEIEKLKEAKCKDYCHHNATCHVEVIF 170
Query: 343 RGVVGPGIAPAVIEHPEDGQSGDANEQHRRQSDHEGILAPLAGTSLVVVRVIGPTALVLI 164
R + P+ H G G ++H Q+ AP+ G V + + TA +L+
Sbjct: 171 REDRVSAVVPSC--HCPQGWEGTRCDRHYVQA----FYAPINGRYNVRLSTMSSTAQLLV 224
Query: 163 LSS 155
S
Sbjct: 225 QQS 227
>U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family
protein 5, isoformb protein.
Length = 1306
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +2
Query: 239 LVITLATVLLIGVSALTIFWVFY---YRGGYAWADDTPDKQFNL-HPTLM 376
L +T+A +IG+ A+ +FW Y R ++ P K + HPT+M
Sbjct: 1130 LAVTVALGAIIGICAVCVFWSRYKTAQRNASNFSHSYPQKLGPIYHPTMM 1179
>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
protein 5, isoforma protein.
Length = 1544
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +2
Query: 239 LVITLATVLLIGVSALTIFWVFY---YRGGYAWADDTPDKQFNL-HPTLM 376
L +T+A +IG+ A+ +FW Y R ++ P K + HPT+M
Sbjct: 1274 LAVTVALGAIIGICAVCVFWSRYKTAQRNASNFSHSYPQKLGPIYHPTMM 1323
>AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical
protein Y116A8A.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 311 RGGYAWADDTPDKQFNLHPTLMV 379
+GGY W+D PD+ N+ L++
Sbjct: 241 KGGYTWSDKNPDRLDNVQDCLVL 263
>AF038615-5|AAB94142.1| 934|Caenorhabditis elegans Hypothetical
protein R02D3.1 protein.
Length = 934
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 490 PVHRYRLPGCPRLP 531
PV RY PGCP LP
Sbjct: 337 PVQRYDTPGCPTLP 350
>Z81568-10|CAB04600.1| 441|Caenorhabditis elegans Hypothetical
protein K08E3.8 protein.
Length = 441
Score = 27.5 bits (58), Expect = 8.3
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 427 LSMLPAHLCQTAARHLPRVSVPVHRYRLPGCPRLP--QQEGHQQLLFAPQLDWLRRHGT 597
+S+ P H+ + + P SVPV+ G P LP Q E + PQ L R G+
Sbjct: 125 MSLPPTHVSRPGSV-APPSSVPVNLQHTSGAPGLPGSQMEHQYPMHLQPQQQTLSRPGS 182
>U41038-3|AAK29708.3| 623|Caenorhabditis elegans Cadherin family
protein 9 protein.
Length = 623
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 64 LCVLILC*FCVIF*LVFILICEDLNKK-KHGKRKES 168
L +LIL C+IF ++ IL+C +K K G R+ S
Sbjct: 522 LTLLILIILCLIFTMLAILVCRKFCEKWKTGHRRSS 557
>AC006655-1|AAF39875.1| 391|Caenorhabditis elegans Serpentine
receptor, class w protein6 protein.
Length = 391
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 48 TLIFQTLCSYTVLVLCYFLTSVYIDL*RLK*KKTWQEERIKTNAVGPMTRTTTSEVPAS 224
TL+F S++ + +C+F++S Y D + + W E+ K TT+ +PA+
Sbjct: 323 TLLFLMASSFSHIFVCFFMSSQYRDTVK---RLVWTEKE-KKGKTKIFVMETTTTLPAT 377
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,268,423
Number of Sequences: 27780
Number of extensions: 288400
Number of successful extensions: 1116
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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