Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1130
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    25   0.46 
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    25   0.46 
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    25   0.46 
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    25   0.46 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.8  

>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 126 TNQYKH*SKNNTKLTQYKNTKFEKLKF 46
           +N YK+ + NN     Y N  ++KL++
Sbjct: 86  SNNYKYSNYNNYNNNNYNNNNYKKLQY 112


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 126 TNQYKH*SKNNTKLTQYKNTKFEKLKF 46
           +N YK+ + NN     Y N  ++KL++
Sbjct: 86  SNNYKYSNYNNYNNNNYNNNNYKKLQY 112


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 126 TNQYKH*SKNNTKLTQYKNTKFEKLKF 46
           +N YK+ + NN     Y N  ++KL++
Sbjct: 86  SNNYKYSNYNNYNNNNYNNNNYKKLQY 112


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 126 TNQYKH*SKNNTKLTQYKNTKFEKLKF 46
           +N YK+ + NN     Y N  ++KL++
Sbjct: 86  SNNYKYSNYNNYNNNNYNNNNYKKLQY 112


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 235 ILAPLAGTSLVVVRVIGPTALVLILSSCHVFF 140
           IL  L    L+V +++ PT+LVL L + ++ F
Sbjct: 271 ILLSLVVFLLLVSKILPPTSLVLPLIAKYLLF 302


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 143  FLFKSSQININTSQKITQ 90
            FL+KSS+ + N  QK T+
Sbjct: 962  FLYKSSESSCNPDQKPTE 979


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 178 ALVLILSSCHVFFYLSL 128
           A+ + +SSC VF +LSL
Sbjct: 275 AIDVWMSSCSVFVFLSL 291


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 473 FHALAFPCIVIGFLAVLDY 529
           F  L  PC++I  +AVL +
Sbjct: 235 FFNLIVPCVLIASMAVLGF 253


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = +2

Query: 29  AKFLISNFNFSNFVFLYCVS 88
           +   + N   SNF+ ++C+S
Sbjct: 87  SNLFVINLAISNFLMMFCMS 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,129
Number of Sequences: 438
Number of extensions: 3627
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)