Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1128
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1227 + 35531840-35532516,35532665-35532836,35533158-355333...    28   2.3  
01_03_0107 - 12613491-12613538,12613906-12614139,12614682-126147...    27   4.0  
07_03_0072 - 13051145-13052362                                         26   9.3  

>01_06_1227 +
           35531840-35532516,35532665-35532836,35533158-35533357,
           35533467-35533622,35536878-35537235,35537407-35537418
          Length = 524

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
 Frame = +1

Query: 85  GSVSFRPSTKCALSWYSPVWL---WPM--AALNLQWDTATPLP 198
           G +     T   L+W+ P+WL   W M  AA N+    AT +P
Sbjct: 410 GGIRCAKETMPLLNWHGPIWLGTDWDMFHAAANVSRTAATRVP 452


>01_03_0107 -
           12613491-12613538,12613906-12614139,12614682-12614713,
           12616021-12616176,12617972-12618159,12618242-12618324,
           12618821-12618976,12620320-12621162,12621197-12621550,
           12621962-12623125
          Length = 1085

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 121 LSWYSPVWLWPMAALN 168
           L+W SP+W WP    N
Sbjct: 773 LNWPSPIWFWPSFTKN 788


>07_03_0072 - 13051145-13052362
          Length = 405

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 263 WSFWIPRWPFWRQHF 307
           WS W PRWP   + F
Sbjct: 364 WSGWFPRWPMNHRWF 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,502,405
Number of Sequences: 37544
Number of extensions: 110693
Number of successful extensions: 339
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)