Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1128
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z81071-6|CAB03010.1|  464|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical
           protein F35C8.5 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 127 WYSPVWLWPMAALNLQWDTATPLP 198
           W   +W++PMA + L W   T LP
Sbjct: 98  WNQLLWIYPMALVQLIWVPDTELP 121


>Z81071-6|CAB03010.1|  464|Caenorhabditis elegans Hypothetical
           protein F28F8.7 protein.
          Length = 464

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 3   ALSHRNISKVGVVLIGY*--INYHRVSSKRISLVSSKHKMRAFVV 131
           AL    ++K  + ++G+   IN H    KRIS +S+  K++ + +
Sbjct: 375 ALKRSELTKEEIEILGHNDNINRHLAVEKRISAMSTSEKLKPYSI 419


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,951,683
Number of Sequences: 27780
Number of extensions: 85115
Number of successful extensions: 233
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)