Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1127
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026209-5|AAB71279.2|  344|Caenorhabditis elegans Serpentine re...    32   0.44 
Z93378-1|CAB07582.1|  303|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81536-4|CAB04364.1|  310|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical p...    28   5.4  
Z81508-9|CAB04140.2|  310|Caenorhabditis elegans Hypothetical pr...    28   5.4  

>AF026209-5|AAB71279.2|  344|Caenorhabditis elegans Serpentine
           receptor, class j protein25 protein.
          Length = 344

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 202 YFINKTIVLGMFFCLFDLKKKTFMCYVYV 116
           YFI   +++ +F+CLF L   T  CY Y+
Sbjct: 126 YFIPYGLLITIFYCLFHLSFWTITCYFYI 154


>Z93378-1|CAB07582.1|  303|Caenorhabditis elegans Hypothetical
           protein F19H8.2 protein.
          Length = 303

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 211 CKTHRHHAKKKNVTTV-FNNLTIKNND*NVSVLP 309
           CKT R H +K N+  +  NN T+ +N  +V V P
Sbjct: 175 CKTFRRHCRKYNLPEIEVNNSTLTSNSTHVQVSP 208


>Z81536-4|CAB04364.1|  310|Caenorhabditis elegans Hypothetical
           protein F40D4.5 protein.
          Length = 310

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 275 IVKLLKTVVTFFFFAWCLCVLQNTVF 198
           ++K LK  V  F F+W +C+L N +F
Sbjct: 204 LMKSLKVSVIVFIFSWYMCMLANDLF 229


>Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical
           protein F14F8.13 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -1

Query: 306 KDRDILIIVLYC*IIKNSSYIFFFCMV 226
           +++D+LI+ L+C ++K S +IF   +V
Sbjct: 46  REKDLLIVQLFCRMVKFSYFIFIIVVV 72


>Z81508-9|CAB04140.2|  310|Caenorhabditis elegans Hypothetical
           protein F20E11.2 protein.
          Length = 310

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 275 IVKLLKTVVTFFFFAWCLCVLQNTVF 198
           ++K LK     F F+W +C+L N +F
Sbjct: 204 LMKSLKVSTIVFIFSWYMCMLANDLF 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,283,359
Number of Sequences: 27780
Number of extensions: 277441
Number of successful extensions: 552
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)