Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1127
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    24   1.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    24   1.2  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   2.0  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   8.2  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   8.2  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 386 SDGYNNGYFASYKLCYKGSFFSID 315
           ++ YNN Y  +YK  YK    +I+
Sbjct: 102 NNNYNNNYNNNYKKLYKNYIINIE 125


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 386 SDGYNNGYFASYKLCYKGSFFSID 315
           ++ YNN Y  +YK  YK    +I+
Sbjct: 102 NNNYNNNYNNNYKKLYKNYIINIE 125


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 401 KRLFNSDGYNNGYFASYKLCY 339
           K + N++ YNN  + +YK  Y
Sbjct: 88  KTIHNNNNYNNNNYNNYKKLY 108


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 523 TNLSCLEAVIHFGPKSR 573
           T L CL ++I F P+ R
Sbjct: 331 TELGCLRSIILFNPEVR 347


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 523 TNLSCLEAVIHFGPKSR 573
           T L CL ++I F P+ R
Sbjct: 331 TELGCLRSIILFNPEVR 347


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 427 CKTTFFIYSLQRWVNVLTAY 486
           C T +++ SL  W++  +AY
Sbjct: 272 CWTPYYVMSLWYWIDRNSAY 291


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 389 NSDGYNNGYFASYKLCY 339
           N + YNN Y  +YK  Y
Sbjct: 336 NYNNYNNNYNNNYKKLY 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,562
Number of Sequences: 438
Number of extensions: 3564
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)