Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1126
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   1.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   1.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.4  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 580 LNRVVPMKLSKRYLNSEIDTIHCKCE 503
           L+++  +KL+ RY++     +HC  E
Sbjct: 288 LSKIQTLKLATRYIDFLFQVLHCNME 313


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 636 KVPNLFNVNQSAISFFNYN*IVLFQ*NFQNVILTAK*ILF 517
           KV NL+   Q ++  + YN ++L     QNV ++    LF
Sbjct: 440 KVMNLYQQYQQSLPVYQYNDLILPGVTIQNVDVSQLVTLF 479


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 394 LNIYIQLSFHGFFCIVRTNNGNG 462
           +N  +Q      FCI RT NG G
Sbjct: 485 INRVVQRGTKMQFCIFRTANGRG 507


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 502 KLFELEKALMKTKLR 458
           KLF  +KALMK ++R
Sbjct: 58  KLFGSKKALMKERIR 72


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 502 KLFELEKALMKTKLR 458
           KLF  +KALMK ++R
Sbjct: 58  KLFGSKKALMKERIR 72


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 502 KLFELEKALMKTKLR 458
           KLF  +KALMK ++R
Sbjct: 58  KLFGSKKALMKERIR 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,760
Number of Sequences: 438
Number of extensions: 3897
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)