Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1125
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    28   1.3  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    28   1.7  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    27   3.9  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   6.7  

>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -2

Query: 628 ENSTFREKREKVKKFNKDFWLSCKTFLSARKHHQHKYRDVILPENWNDEVI 476
           +N  F++  EK+K+ NK  +   K+FLS  +    +  D+   +++ D  I
Sbjct: 186 QNENFKDDYEKIKEENKRLYKERKSFLSKIEKSACEIHDLKESDSFKDHEI 236


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 607  KREKVKKF--NKDFWLSCKTFLSARKHHQHKYRDVILPENW 491
            K E V+K   N+D +   + +LS R+H + K     L ENW
Sbjct: 918  KWEAVQKCFPNRDIYALTRRYLSIRQHTKFKGLQQFLSENW 958


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/47 (27%), Positives = 29/47 (61%)
 Frame = -3

Query: 657 GVFFGVIRYVKTLLFERKEKK*RNLIKTFGFLAKLFYLLESIININI 517
           GV+  +   V+ LL   K ++  +L+KT+G L  + ++LE +++ ++
Sbjct: 852 GVYPFLPEIVRALLLLDKREQAIDLVKTYGHLHYINFVLEKLLSSSL 898


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 308  YNANARFHIIT*KYELNKLCFNYFKNKVSKYSI 406
            Y+ N+ FH++   Y+L  L   YF++   +Y I
Sbjct: 943  YDENSPFHVVVTSYQLVVLDAQYFQSVKWQYMI 975


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,629,037
Number of Sequences: 5004
Number of extensions: 49126
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)