Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1124
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    29   0.67 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.88 
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    29   0.88 
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    29   0.88 
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    28   1.2  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    28   1.5  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   2.0  
SPCC14G10.03c |ump1||proteasome maturation factor Ump1 |Schizosa...    27   2.7  
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr...    26   4.7  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    26   6.2  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    25   8.2  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    25   8.2  

>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = -1

Query: 482 VTGNSETELVSGVLDGNDLTIRGCVCIGSLLDQSSVVLVITDCLQITLLLSLNVVTSF-- 309
           +T  SE +L   VL G    +R    +G +    ++V ++  CL     L LNV + F  
Sbjct: 161 ITLPSEVDLGLKVLKGACYAMRAMYILGFIFFALTIVSIVISCLPFFGPLFLNVFSFFAT 220

Query: 308 I*SFVASV 285
           I +F+A+V
Sbjct: 221 IFTFIAAV 228


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 20/85 (23%), Positives = 29/85 (34%)
 Frame = +3

Query: 138 LPLEQNFNNYQPQQQEYRSAKPVDDFRPKVQLETSTYIPIIRFDKEQGTDGSYKTSYETG 317
           +P+ Q   NYQ Q   Y+     D +     L      P  +F+   G       S    
Sbjct: 29  MPINQGGMNYQQQTYPYQQPYQPDGYAGNTMLPFQQSQPATQFNNGFGYASQPTGSVADY 88

Query: 318 NNIQAQEQGYLKTVGDNQDNTALVQ 392
              Q Q  GY   +    +NT  +Q
Sbjct: 89  GQQQQQMYGYNGMMPQTMNNTGFMQ 113


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +3

Query: 147 EQNFNNYQPQQQEYRSAKPVDDFRPK-VQLETSTYIPIIRFDKEQGTDGSYKTSYETGNN 323
           +  F + + Q+++Y +  P++  RP+ + +    YI I     + GTD ++    E   +
Sbjct: 178 QDEFEDEERQEEKYETGPPIESVRPEALGISDDDYIQIYEVFGD-GTDYAFALEDEDAED 236

Query: 324 IQAQEQGYLKTV 359
            + +E   LKT+
Sbjct: 237 -ELEESVSLKTI 247


>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 511 LKFKKALTLSTPASRLTRNAPP*KPSQTPKLPDNKKRKPLSITKVNTTSNN 663
           L FKKA+        L +   P  P   P+LP+  K KP   T ++  + N
Sbjct: 217 LSFKKAVESIDSKQDLDKQDSPLPPDDAPELPNISKLKPKFHTLLDMLAEN 267


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 176 LGLIVVEVLFKWELVFHLLFWLQRNLPLGKSRRNGNKS 63
           +GL+V+   + W + +HL++ L R  P+  + R    S
Sbjct: 20  IGLLVIVGTWLWSVCYHLIYILNRYQPISPNPRGSLNS 57


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 538 STPASRLTRNAPP*KPSQTPKLPDNKKRKPLSITKVN 648
           STP +R T   PP    Q P  P+ K+    S  K N
Sbjct: 24  STPKARETTEPPPPSSQQPPSTPNGKEAASPSALKQN 60


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 481 TTSLPLPLYRLKFKKALTLSTPASRLTRNAPP*KPSQTPKLPDNKKRKPLSITK 642
           TT   L + + +FK   T     +RL  N P  KP+   +LP   +  P SIT+
Sbjct: 489 TTDKKLNVPKFEFKPTATADVQTNRLKENEP--KPTFFAQLPSKTQETP-SITE 539


>SPCC14G10.03c |ump1||proteasome maturation factor Ump1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 129

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 105 SLKPEQQVEDQLPLEQNFNNYQPQQQEYR 191
           S+    +VE++ PLE    N++ QQQ+ R
Sbjct: 25  SIPAVHRVENKHPLESRLKNWEAQQQQIR 53


>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 323

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 198 KPVDDFRPKVQLETSTYIPIIRFDKEQGTDGSYKTSYETGNNIQAQEQGYLKT 356
           KP+ D +PK + +T T + I R+   Q  +   K   +     + QE+ +  T
Sbjct: 106 KPMQDEKPKTEADTRT-LKIARYRMRQNLEKELKALSKDSETNEEQERKFWLT 157


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 93  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRSAKPVDDFRPKVQ 230
           Q++   + +QQ + Q   +Q     Q QQQ+ +   P + F P  Q
Sbjct: 257 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQAPQNAFFPNPQ 302


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 208 MTSDLKSNWRPVPTS 252
           M+S LKS W PVP++
Sbjct: 1   MSSQLKSTWAPVPST 15


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 217 DLKSNWRPVPTSPLSVSIRNKEPTEATKLHMK 312
           DLK +W+ VP+S   +  +   P +  KL +K
Sbjct: 430 DLKEHWKEVPSSFTDILTQKTIPCKDHKLKIK 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,897
Number of Sequences: 5004
Number of extensions: 59935
Number of successful extensions: 215
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)