Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1121
         (740 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2E933 Cluster: AGC family protein kinase; n=1; Trichom...    36   0.79 
UniRef50_Q6FW76 Cluster: Pre-mRNA-splicing factor CLF1; n=1; Can...    33   9.7  

>UniRef50_A2E933 Cluster: AGC family protein kinase; n=1;
           Trichomonas vaginalis G3|Rep: AGC family protein kinase
           - Trichomonas vaginalis G3
          Length = 471

 Score = 36.3 bits (80), Expect = 0.79
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = +2

Query: 125 ISENIILIPNSSITHLFDVELTVFLNIYQKSISYTFYDYRRVRFAFLVMFI 277
           +SEN I IPNS  T + D+ + +FL  +     Y  Y+  RV F  L+ +I
Sbjct: 375 VSENRIAIPNSFNTKIIDIAI-LFLACFSNISKYPIYEIVRVIFLLLIFWI 424


>UniRef50_Q6FW76 Cluster: Pre-mRNA-splicing factor CLF1; n=1;
           Candida glabrata|Rep: Pre-mRNA-splicing factor CLF1 -
           Candida glabrata (Yeast) (Torulopsis glabrata)
          Length = 695

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = -3

Query: 231 KVYEIDFWYMLRKTVNSTSNRCVIEEFGIKIIFSDITM*SLLRDRFNKQYNR-WVYYMMF 55
           KVY+ D W +  + + +   + V+E F   ++ + I   S  +D++ KQY   W+ Y+ F
Sbjct: 312 KVYDYDTWLLYLQLLENNYPKLVMEAFS-NVLNAAIPT-SRTKDKYWKQYILIWIKYLTF 369

Query: 54  LKL 46
           L+L
Sbjct: 370 LEL 372


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 666,676,408
Number of Sequences: 1657284
Number of extensions: 12865335
Number of successful extensions: 26097
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26092
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)