Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1121
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41547-1|AAA83192.2|  489|Caenorhabditis elegans Glutamate recep...    30   2.0  
AF318612-1|AAK01100.1|  406|Caenorhabditis elegans ionotropic gl...    30   2.0  
Z74036-3|CAA98488.1|  517|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z73425-4|CAA97786.1|  667|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>U41547-1|AAA83192.2|  489|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 8 protein.
          Length = 489

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = +2

Query: 413 IFVIKGAFYLVLVSTIRYFLIEL*LSLPFQ*LNIFLLRNFFKIFTLNGSPEKLKKW 580
           + +I G  +LV+ + IR    E+ ++ PF+  +I++   FF IF   G PE+ + W
Sbjct: 144 VILISGVIFLVMTNIIRKVYEEMTVT-PFE--SIWV---FFSIFVQQGLPEQPRSW 193


>AF318612-1|AAK01100.1|  406|Caenorhabditis elegans ionotropic
           glutamate receptor GLR-8 protein.
          Length = 406

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = +2

Query: 413 IFVIKGAFYLVLVSTIRYFLIEL*LSLPFQ*LNIFLLRNFFKIFTLNGSPEKLKKW 580
           + +I G  +LV+ + IR    E+ ++ PF+  +I++   FF IF   G PE+ + W
Sbjct: 136 VILISGVIFLVMTNIIRKVYEEMTVT-PFE--SIWV---FFSIFVQQGLPEQPRSW 185


>Z74036-3|CAA98488.1|  517|Caenorhabditis elegans Hypothetical
           protein F55C10.4 protein.
          Length = 517

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +2

Query: 86  CLLKRSRNSDYI-VISENIILIPNSSITHLFDVELTVFLNIYQKSISYTFYDYRRVRFAF 262
           CLLK   ++ +I  +  + ILIPN++ ++  + E     + +  ++ Y  YDY+ ++ + 
Sbjct: 248 CLLKYKESASFIGSLDMDDILIPNNANSYYEEFEREYAGSQFISALHYDKYDYKTIKVSE 307

Query: 263 L 265
           L
Sbjct: 308 L 308


>Z73425-4|CAA97786.1|  667|Caenorhabditis elegans Hypothetical
           protein F12F6.8 protein.
          Length = 667

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +2

Query: 80  LYCLLKRSRNSDYIVISENIILIPNSSITHLFDVELTVFLNIYQKSISYTFYDYRRVR 253
           +YC L++ R+S YI+  +       +S TH    ++ +   I +   +YT  D++  R
Sbjct: 37  IYCHLRKMRSSSYILSKDR--TRNETSWTHRATEQIRLKFQISKIDFTYTLLDFKTFR 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,960,345
Number of Sequences: 27780
Number of extensions: 329840
Number of successful extensions: 672
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)