Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1119
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121...    34   0.11 
07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,127...    31   0.79 
11_01_0540 + 4269373-4269563,4269636-4269717,4269736-4269889,426...    30   1.8  
11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,151...    28   5.6  
01_01_0254 - 2074095-2074100,2074389-2074462,2074572-2074633,207...    28   5.6  
12_01_0197 + 1456296-1456668,1456930-1458746                           28   7.4  
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500...    27   9.7  

>02_01_0177 +
           1214226-1214294,1214707-1214794,1216095-1216308,
           1216413-1216738,1216860-1217013,1217377-1217438,
           1218078-1218133,1219456-1221279,1221775-1222698,
           1222855-1222866
          Length = 1242

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -1

Query: 296 GTQSERESADAGGRTSCESARVGTTNPPSSDE 201
           G++SE E  DAGGR+  ++  + TTN   SDE
Sbjct: 340 GSESEDEGGDAGGRSGNQNRYLRTTNASDSDE 371


>07_01_0181 +
           1274177-1274200,1274335-1276161,1276519-1277448,
           1278314-1278367
          Length = 944

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -1

Query: 296 GTQSERESADAGGRTSCESARVGTTNPPSSDE 201
           G++SE E  DAGGR++ ++  + TTN   SDE
Sbjct: 25  GSESEDEGGDAGGRSN-QNRYLRTTNASDSDE 55


>11_01_0540 +
           4269373-4269563,4269636-4269717,4269736-4269889,
           4269948-4269972,4270838-4270976,4271076-4271261,
           4271379-4271442,4271544-4271659
          Length = 318

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +1

Query: 193 YCFSSELGGLVVPTRADSQEVLPPASADSL---SLCVP-HYKEHFLSNDITPPVATLY 354
           +C SS  GGL+     D   VL  AS  SL   ++  P  Y E  L N  +P  ATLY
Sbjct: 105 HCLSSGGGGLLFVGDGDGNLVLLHASLGSLCPIAISTPSSYNEPMLMNYYSPGSATLY 162


>11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,
            1510195-1510256,1510406-1510479,1510812-1510864,
            1511072-1513550
          Length = 1134

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 456  GVIIISMKVDGTQSIDLIT*QSNTTIHILIGSYYVKSCYR 337
            GV+++ + V G +  DLI  +  T +H ++  +    CYR
Sbjct: 1034 GVVLLEL-VSGRRVFDLIVGEDKTKVHEMLKKFIKMICYR 1072


>01_01_0254 -
           2074095-2074100,2074389-2074462,2074572-2074633,
           2074790-2075123,2075271-2075487,2075575-2075685,
           2076304-2076840
          Length = 446

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 189 RFGLKGGIAVVTILRPYNLYLKVGGAFTL*MSMGSSNHLTPG 64
           + G+ G + V+   R   + L +GG     ++MG + HL  G
Sbjct: 354 KLGILGALEVIDAARKARIALMIGGMVETRIAMGFAGHLAAG 395


>12_01_0197 + 1456296-1456668,1456930-1458746
          Length = 729

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 456 GVIIISMKVDGTQSIDLIT*QSNTTIHILIGSYYVKSCYR 337
           GV+++ + V G +  DLI  +  T +H ++  +    CYR
Sbjct: 629 GVVLLEL-VSGKRVFDLIIGEDKTKVHEMLKKFIKMICYR 667


>03_05_0248 +
           22348504-22348568,22349064-22349371,22349476-22350039,
           22350082-22350128,22351244-22351715,22352349-22352611
          Length = 572

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 262 PASADSLSLCVPHYKEHFLSNDITPPVATLYVI 360
           P S +S+   + HYK HFL N +T P A + ++
Sbjct: 15  PCSTNSIRSHL-HYKPHFLGNIMTKPKAKMRLL 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,350,599
Number of Sequences: 37544
Number of extensions: 385738
Number of successful extensions: 772
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)