Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1119
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18293| Best HMM Match : TPK_B1_binding (HMM E-Value=1e-24)          29   4.3  
SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)                   28   7.5  
SB_47687| Best HMM Match : SCP (HMM E-Value=1.8e-16)                   27   9.9  
SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_18293| Best HMM Match : TPK_B1_binding (HMM E-Value=1e-24)
          Length = 262

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = -3

Query: 516 TGVTWNLEHIGLKFCID*ISGVIIISMKVDGTQSIDLIT*QSNTTIHILIGSYYVKSC 343
           +G+ WNLEH  L+F       +I  S  +DGT    L+  ++N T+   IG   +KSC
Sbjct: 206 SGLKWNLEHSTLEF-----GSLISTSNMLDGT---GLVNIETNETLLWTIG---IKSC 252


>SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)
          Length = 831

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 296 GTQSERESADAG--GRTSCESARVGTTNPPSSDE 201
           GTQ+   +   G  G  +CE + +G TN PSS E
Sbjct: 538 GTQTNSWAFPGGVLGGNNCEDSGIGFTNSPSSSE 571


>SB_47687| Best HMM Match : SCP (HMM E-Value=1.8e-16)
          Length = 600

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 205 SELGGLVVPTRADSQEVLPPASADSLSLCVPHYKEHFLSNDITPPV 342
           S++GG   P   +  E+ PPA  D      P  + H   ++ T PV
Sbjct: 144 SQIGGSEPPPSGEQLEIRPPAHGDEKPETSPSPQGHRKPDETTLPV 189


>SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +1

Query: 382 GGITLSCDEIYRLCAVNLHTNDNNTTDSVYAKFQTNVFQVPSHTSSFNMYVYVIMFVIAC 561
           G ++++C      C    H +  +    +Y+    +V  V  H +S  ++V  +MF + C
Sbjct: 750 GTVSITCSASCITCTATFHVS--SVMCHLYSVI-IHVSSVMFHVNSVIIHVSSVMFHVNC 806

Query: 562 RLLHV 576
            +LHV
Sbjct: 807 VMLHV 811


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,289,761
Number of Sequences: 59808
Number of extensions: 461049
Number of successful extensions: 930
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)