Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1118
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0256 - 8362374-8363003 35 0.044
02_01_0701 + 5238179-5238461,5238540-5238949,5240413-5240793,524... 35 0.044
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785... 35 0.044
10_08_0132 + 15087274-15087797,15089544-15089732,15090048-150901... 30 1.7
02_05_0092 + 25749070-25750638 30 1.7
07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175... 29 2.2
05_03_0649 - 16566815-16567392,16567491-16567623,16568000-165687... 29 2.9
12_02_0441 + 19115990-19116478 29 3.8
05_05_0065 - 22069798-22069890,22070878-22071160,22071240-220713... 28 5.1
02_05_0174 - 26486955-26487728 28 5.1
02_03_0245 + 16802005-16802814,16802849-16803310,16804233-16804448 28 5.1
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306... 28 6.7
04_03_0314 - 14238620-14240128 28 6.7
04_03_1001 - 21609280-21610131 27 8.9
01_07_0342 - 42860548-42862343,42863345-42863396,42863666-428638... 27 8.9
01_06_1435 + 37351653-37351990,37352241-37352424 27 8.9
01_05_0627 + 23802235-23802853,23803357-23803430,23804207-238043... 27 8.9
>02_02_0256 - 8362374-8363003
Length = 209
Score = 35.1 bits (77), Expect = 0.044
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +3
Query: 282 IIRHDQPQTI-NYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAE 458
++R DQ T+ AAP A + V P P P+ H PAA SAP +VA
Sbjct: 58 MVRDDQEPTVARPAAPSAVVVVVAP----PLPPPLPIHRVPAAAVQPSAP--PVVADDVA 111
Query: 459 EIAYPKYEYNYSVADGHSGDN 521
+AY YE G GD+
Sbjct: 112 LLAY-AYEKKKKKRRGSDGDS 131
>02_01_0701 +
5238179-5238461,5238540-5238949,5240413-5240793,
5241112-5241244,5241495-5241622,5241714-5241914
Length = 511
Score = 35.1 bits (77), Expect = 0.044
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Frame = +3
Query: 252 SSAESVSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPV 431
++A + ++ N + PQ + AP ++ AP P + A+ AA + AP
Sbjct: 14 AAAATTATANSMPLAPPQPPSSGAPFSQPPSTAGTVKTEAPPPPSTSASSAASAAAPAPA 73
Query: 432 AKIVAHQAEE----IAYPKYEYNYSVADGHSGDNKSQQEVRDGDAVKGSYS 572
A A AEE I P Y +S H + + E +G+A S S
Sbjct: 74 AAAAAAAAEESPCTITIPSYSAWFSYDSIHETERRLMPEFFEGEAAAASGS 124
>01_07_0084 + 40976976-40977164,40978174-40978201,40978445-40978575,
40978941-40979434,40979516-40979609,40979686-40979779,
40980342-40980444,40980550-40980601,40980716-40980756,
40980881-40980960,40981490-40981936,40982378-40982554,
40983205-40983803,40983886-40985040
Length = 1227
Score = 35.1 bits (77), Expect = 0.044
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +3
Query: 300 PQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKY 479
P T + AP+ L V H +T + P AV+ H P +AH+ + I++P
Sbjct: 919 PST-QHVAPMNNLLSRATVHQHTQSYALT--SDPVAVAVHHQPAVNKLAHEVQSISHPAV 975
Query: 480 EYNYSVADGHS 512
++ SVA+ H+
Sbjct: 976 SHS-SVAESHA 985
>10_08_0132 +
15087274-15087797,15089544-15089732,15090048-15090186,
15090454-15090594,15091420-15091569,15091908-15092011,
15092258-15092432,15092714-15092823,15092906-15093073,
15093180-15093345,15093771-15094049,15094445-15094543,
15094619-15094676,15095145-15095336,15095693-15095724,
15096023-15096117,15096321-15096426
Length = 908
Score = 29.9 bits (64), Expect = 1.7
Identities = 25/73 (34%), Positives = 34/73 (46%)
Frame = -2
Query: 252 NSGLEQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGLVPPGD 73
+SG+ +LQG GKPQ QRG+ + H G R G + P ++ S PP
Sbjct: 274 HSGVASGYSLQG--GKPQQQRGEFGRLRFLPRHAGVARRRRRRGGRSPFRLVSPSHPP-P 330
Query: 72 QLWTPPQMRTVLL 34
T P M T+ L
Sbjct: 331 LSKTEPMMDTLEL 343
>02_05_0092 + 25749070-25750638
Length = 522
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +3
Query: 255 SAESVSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYH 392
SA + S Q+ H +P ++ AAP+ V P T APAPV H
Sbjct: 370 SAPAASEQH---HQEPAMVDTAAPMDIHNVQEPDTAAPAPAPVVEH 412
>07_03_0982 +
23116343-23117089,23117227-23117313,23117424-23117555,
23118135-23118269,23118644-23118709,23118797-23118907,
23119237-23119329,23119555-23119659,23119752-23119829
Length = 517
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +3
Query: 294 DQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHS-APVAKIVAHQAEEIAY 470
DQP + AP + A P + PAP ++PA Y+S P A VA Q A
Sbjct: 59 DQPPSAPSYAPPPQYAGYAPPYNNPNPAPYPPESSPAPAPYYSYPPTAAGVATQHAPAAE 118
Query: 471 P 473
P
Sbjct: 119 P 119
>05_03_0649 -
16566815-16567392,16567491-16567623,16568000-16568765,
16569242-16569260,16569320-16569367,16569401-16569506
Length = 549
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +3
Query: 369 APAPVTYHAAPAAVSYHSAPVAKIVAH-QAEEIAYPKYEYNYSVADGHSGDNKSQQEVRD 545
+P+P A+ AAV+ H+AP + H + IA P + + G +G+ S+ EV D
Sbjct: 132 SPSPAPSPASSAAVAEHAAPPRRGEEHARPRSIALPP-----ASSSGDAGET-SRPEVTD 185
Query: 546 GDAVK 560
G A +
Sbjct: 186 GSATR 190
>12_02_0441 + 19115990-19116478
Length = 162
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Frame = +3
Query: 279 NIIRHDQPQTINYAAPVAKLAV---ATPVTYHAAPAPVTYHAAPAAVSYHSAPVA 434
N+ D + Y P+ V +H P PV Y A SY+ APVA
Sbjct: 40 NVCLRDLAGVLGYRCPLCNFTVHRQGCRRPHHHHPPPVAYTQHQRASSYNQAPVA 94
>05_05_0065 -
22069798-22069890,22070878-22071160,22071240-22071335,
22071456-22071558,22071633-22071693,22071816-22071887,
22072315-22072383,22072459-22072482,22073278-22073316,
22073862-22073951,22074063-22074095
Length = 320
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2
Query: 240 EQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRH 139
E H L G HG P +R + Q RH+E H
Sbjct: 275 EFHKLLNGNHGDPTDRRQRAQMNGRHDEDINHAH 308
>02_05_0174 - 26486955-26487728
Length = 257
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Frame = +3
Query: 318 AAPVAKLAVATPVTYHAAPAPV--------TYHAA---PAAVSYHSAPVAKIVAHQAEEI 464
AAP LA A PVT AP P ++ AA PA +HS P+ +VA A
Sbjct: 6 AAPALSLAEAAPVTAVLAPCPTPSRTFRRRSWVAAICRPALKCHHSRPLTAVVAAAAAAA 65
Query: 465 A 467
A
Sbjct: 66 A 66
>02_03_0245 + 16802005-16802814,16802849-16803310,16804233-16804448
Length = 495
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = -2
Query: 246 GLEQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGLVPPGDQL 67
G+EQH QG+ G QG+R ++P++H H + R P+ + VP +
Sbjct: 422 GIEQH---QGKLGVDQGKRPAPEKPRQHWPHVDQLAPLADGSRSTPESRVADPVPITETS 478
Query: 66 WTPPQMRTVLLIWKT 22
+ ++ L W T
Sbjct: 479 PRHSRRASLSLKWTT 493
>06_02_0046 +
10928708-10928798,10929997-10930077,10930567-10930685,
10931275-10931894,10931992-10933184,10933280-10933359,
10933751-10933846,10933931-10934004,10936007-10936151,
10936323-10936487
Length = 887
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 315 YAAPVAKLAVATPVTYHA-APAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIA 467
Y APV+ ++ PV + AP PV+Y++ P+ + A+ + A ++
Sbjct: 580 YYAPVSASGISIPVDATSIAPVPVSYYSYPSVTMAATGEAAEPSGYYAASVS 631
>04_03_0314 - 14238620-14240128
Length = 502
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 324 PVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIV 443
P + A TP PAP +A +A S S P K+V
Sbjct: 30 PPSTAAPPTPTAVRCTPAPAAAPSAASAASARSIPPPKLV 69
>04_03_1001 - 21609280-21610131
Length = 283
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 300 PQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAA 407
P ++ AP +LA+ YHA PA +HAA AA
Sbjct: 99 PSSVPAPAPPPQLALP----YHAVPAAAWHHAAAAA 130
>01_07_0342 -
42860548-42862343,42863345-42863396,42863666-42863848,
42864288-42864461,42864528-42864962
Length = 879
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 180 QEPQRHNEHRGFRHGVRCSGRKLPQQ 103
QE Q H E R R+G RKLP++
Sbjct: 68 QEGQHHKEERDERYGFEIQVRKLPKR 93
>01_06_1435 + 37351653-37351990,37352241-37352424
Length = 173
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 222 QGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCSGR 118
+G GKP+G+ + P +EHR F G+ GR
Sbjct: 90 RGGGGKPRGEERRRGVPWSEDEHRLFLEGLDRYGR 124
>01_05_0627 +
23802235-23802853,23803357-23803430,23804207-23804364,
23804640-23804964
Length = 391
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = -2
Query: 282 CSGKRRTRQTNSGLEQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQ 103
C +R R+ + L QGQ G+ + ++ +R + +G R CS +L
Sbjct: 4 CGARRAAREALAQLAVGQLGQGQEEDVLGREKEGKDGERKKKKKGRRTSTACSAERLSHV 63
Query: 102 MSS 94
SS
Sbjct: 64 KSS 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,577,115
Number of Sequences: 37544
Number of extensions: 249192
Number of successful extensions: 1023
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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