Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1118
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    31   0.49 
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    30   1.1  
Z81529-5|CAB04296.1|  288|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    29   2.6  
AC024790-2|AAF60638.1|  220|Caenorhabditis elegans Ground-like (...    29   2.6  
AC006672-7|AAM98004.1|  668|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical p...    28   6.0  
U88308-13|AAK68215.1|  534|Caenorhabditis elegans Uncoordinated ...    28   6.0  
CU457740-4|CAM36334.1|  735|Caenorhabditis elegans Hypothetical ...    28   6.0  
AF104858-1|AAC79090.1|  390|Caenorhabditis elegans putative RNA-...    28   6.0  
AF063007-5|AAD47125.1|  712|Caenorhabditis elegans Prion-like-(q...    28   6.0  
AL117203-6|CAB60419.1|  234|Caenorhabditis elegans Hypothetical ...    27   8.0  
AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical ...    27   8.0  
AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like ...    27   8.0  
AC024847-10|AAF60859.1|  393|Caenorhabditis elegans Ground-like ...    27   8.0  

>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 20/56 (35%), Positives = 22/56 (39%)
 Frame = -2

Query: 303 GADHDG*CSGKRRTRQTNSGLEQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHG 136
           G    G CSG  R R  + G   HG+  G  G   G  G          HRG RHG
Sbjct: 287 GHGRHGSCSGSPRGRHGHGGHGGHGSRSGSPGGRHGHGGS-------GHHRGGRHG 335



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = -2

Query: 219 GQHGKPQGQRGKLQEPQRHNEHRGFRHGVR 130
           G HG P       + P RH  H    HG R
Sbjct: 395 GHHGPPHHHHHDGRSPSRHGHHHHHHHGCR 424


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
 Frame = +3

Query: 267 VSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSY------HSAP 428
           V+  +I +  QP    Y APVA +A          PAP+  H AP   ++      H AP
Sbjct: 359 VAPAHITQEIQPAPQPYVAPVAPVAQEIHTIQPIQPAPI--HPAPLQPAHVVQETAHVAP 416

Query: 429 VAKIVAHQ 452
             K+VA +
Sbjct: 417 ETKVVAEE 424


>Z81529-5|CAB04296.1|  288|Caenorhabditis elegans Hypothetical
           protein F35E8.7 protein.
          Length = 288

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 318 AAPVAKLAVATPV--TYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQA 455
           + P A  + A P   T   APA VT  AAPAAV+  +A     VA  A
Sbjct: 192 SGPTATTSTAAPAAPTTTVAPAVVTTTAAPAAVTTTAAVTTTTVAAAA 239


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 26/105 (24%), Positives = 43/105 (40%)
 Frame = +3

Query: 252 SSAESVSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPV 431
           S+  S SSQ+  +    Q  NY +     + ++  T    P PV  +    + SYH+   
Sbjct: 578 SAYNSQSSQHQTKSIPVQ--NYQSSNYNKSYSSQTTTQHQPQPVAANNN-YSTSYHTERS 634

Query: 432 AKIVAHQAEEIAYPKYEYNYSVADGHSGDNKSQQEVRDGDAVKGS 566
           +   A Q + IA P  + N S  + HS           G ++K +
Sbjct: 635 STTTAQQPQTIALPPPQNNSSHTETHSSTGPIMMHSPGGHSMKST 679


>AC024790-2|AAF60638.1|  220|Caenorhabditis elegans Ground-like (grd
           related) protein 5 protein.
          Length = 220

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = +3

Query: 363 HAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGDNKSQ 530
           +AAPAP  + A PA  +  SAP   IVA   +  A P ++ +  V D  +G ++S+
Sbjct: 80  YAAPAP--FAAQPAQFAVQSAPPQPIVAPPPQAYAAP-HKRHVDVMDIDTGVDQSE 132


>AC006672-7|AAM98004.1|  668|Caenorhabditis elegans Hypothetical
           protein K08D12.6 protein.
          Length = 668

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 321 APVAKLAVATPVTYHAA-PAPVTYHAAPAAVS-YHSAPVAKIVAHQAEEIAY 470
           APV +  VA P    AA PAP    AAPAA +   +AP A    ++++  AY
Sbjct: 108 APVEQAPVAVPAPAPAAAPAPDCGSAAPAAAAPAAAAPAATDSGYRSKRNAY 159



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 321 APVAKLAVATPVTYHAA-PAPVTYHAAPAAVS-YHSAPVAKIVAHQAEEIAY 470
           APV +  VA P    AA PAP    AAPAA +   +AP A    ++++  AY
Sbjct: 436 APVEQAPVAVPAPAPAAAPAPDCGSAAPAAAAPAAAAPAATDSGYRSKRNAY 487


>Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical
           protein T06E4.10 protein.
          Length = 180

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 20/49 (40%), Positives = 23/49 (46%)
 Frame = +3

Query: 321 APVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIA 467
           APV   A A    Y  APAPV   A   A +Y  APVA  +   A  +A
Sbjct: 83  APVVAAAPALAPAY--APAPVVAAAPAFAPAYAPAPVASPMIAAAPALA 129


>U88308-13|AAK68215.1|  534|Caenorhabditis elegans Uncoordinated
           protein 11, isoform d protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = +3

Query: 294 DQPQTINYAAPVAK---LAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEI 464
           DQ ++IN A P A     A   P T  A P  +    + AA         ++V+HQA   
Sbjct: 355 DQKKSINSANPFANDVASAAPAPATSAAQPDLLDMFQSSAAPLLQCNRKLQMVSHQAAPF 414

Query: 465 AYP 473
            YP
Sbjct: 415 GYP 417


>CU457740-4|CAM36334.1|  735|Caenorhabditis elegans Hypothetical
           protein C50E10.4 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +3

Query: 321 APVAKLAVATPVTYHAAP----APVTYHAAPAA 407
           AP A++A  TPV    AP    AP T  AAPAA
Sbjct: 256 APAAEVAPETPVAAPMAPAAPAAPATPEAAPAA 288


>AF104858-1|AAC79090.1|  390|Caenorhabditis elegans putative
           RNA-binding protein PRP-1 protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 306 TINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPK 476
           T+    P  + +V   V   +APAP+++ AA AA ++    + K  A   +  A P+
Sbjct: 196 TVTEVQPPVEESVTATVPTSSAPAPISF-AAVAAAAHRKEALRKHQAQNPQPAAPPR 251


>AF063007-5|AAD47125.1|  712|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 59
           protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 306 TINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPK 476
           T+    P  + +V   V   +APAP+++ AA AA ++    + K  A   +  A P+
Sbjct: 196 TVTEVQPPVEESVTATVPTSSAPAPISF-AAVAAAAHRKEALRKHQAQNPQPAAPPR 251


>AL117203-6|CAB60419.1|  234|Caenorhabditis elegans Hypothetical
           protein Y48C3A.9 protein.
          Length = 234

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 20/59 (33%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
 Frame = -2

Query: 210 GKPQGQRGKLQEPQRHNE----HRGFRHGVRCSGRKLPQQMSSGLVPPGDQLWTPPQMR 46
           G P G  G    P    E    H G   G    GR  P  M+ G +PPG     PP  R
Sbjct: 108 GMPPGMNGHFAPPPMGMEMMGGHPGAFGGRFAPGRMPPGAMAPGGMPPGAFPMFPPDPR 166


>AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical
           protein Y47D3B.6 protein.
          Length = 269

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +3

Query: 300 PQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVA 434
           P  +   AP+   A A    Y  AP P    AAPA     +AP A
Sbjct: 52  PMMMAPPAPLPAYAPAPLPAYAPAPLPAPVFAAPAPAPVFAAPFA 96


>AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like
           (grd related) protein16, isoform b protein.
          Length = 453

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
 Frame = +3

Query: 258 AESVSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHA-APAAVSYHSAPVA 434
           AE+ +   +   + P  +   APV       PV     PAPV     AP A +   +   
Sbjct: 282 AETEAPVVVAETEAPAVVETEAPVVIEETEAPVVVEETPAPVVEETQAPVAAAKEESTYD 341

Query: 435 KIVAHQAEEIAYPKYEYNYSVADGHSGDNKSQQEVRDGD 551
            IV  Q         E   +V + +     + +E  +G+
Sbjct: 342 DIVEEQPSTATETATEQVDTVEETNEAVEYADEEGDEGN 380


>AC024847-10|AAF60859.1|  393|Caenorhabditis elegans Ground-like
           (grd related) protein16, isoform a protein.
          Length = 393

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
 Frame = +3

Query: 258 AESVSSQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHA-APAAVSYHSAPVA 434
           AE+ +   +   + P  +   APV       PV     PAPV     AP A +   +   
Sbjct: 222 AETEAPVVVAETEAPAVVETEAPVVIEETEAPVVVEETPAPVVEETQAPVAAAKEESTYD 281

Query: 435 KIVAHQAEEIAYPKYEYNYSVADGHSGDNKSQQEVRDGD 551
            IV  Q         E   +V + +     + +E  +G+
Sbjct: 282 DIVEEQPSTATETATEQVDTVEETNEAVEYADEEGDEGN 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,835,266
Number of Sequences: 27780
Number of extensions: 185845
Number of successful extensions: 734
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)