Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1116
         (768 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC008502-1|AAH08502.1|   99|Homo sapiens chromosome 4 open readi...    71   5e-12
Z46629-1|CAA86598.1|  509|Homo sapiens SOX9 protein.                   33   1.1  
S74506-1|AAB32870.1|  509|Homo sapiens inactivating mutations as...    33   1.1  
BT006875-1|AAP35521.1|  509|Homo sapiens SRY (sex determining re...    33   1.1  
BC056420-1|AAH56420.1|  509|Homo sapiens SRY (sex determining re...    33   1.1  
BC007951-1|AAH07951.1|  509|Homo sapiens SRY (sex determining re...    33   1.1  

>BC008502-1|AAH08502.1|   99|Homo sapiens chromosome 4 open reading
           frame 34 protein.
          Length = 99

 Score = 70.9 bits (166), Expect = 5e-12
 Identities = 37/93 (39%), Positives = 50/93 (53%)
 Frame = +3

Query: 168 DPCECLWNHELAMRRLISLLRQGQSYCTESECLEQLPGLPQPESAGNSXXXXXXXXXXXX 347
           DPCEC+ +HE AMRRLI+LLRQ QSYCT++ECL++LPG P  ++  +             
Sbjct: 7   DPCECVCSHEHAMRRLINLLRQSQSYCTDTECLQELPG-PSGDNGISVTMILVAWMVIAL 65

Query: 348 XXXXXRPRRNQIQDAAKPAHNPHDRDGAPPTPP 446
                RP   +         +PH+    PP PP
Sbjct: 66  ILFLLRPPNLRGSSLPGKPTSPHNGQD-PPAPP 97


>Z46629-1|CAA86598.1|  509|Homo sapiens SOX9 protein.
          Length = 509

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 397 NQRTILTTVTVLPLHLQEFNQHLPRRLVHPEWSLPPLNSSY 519
           +QRT + T  + P H  E  QH P+++ +  ++LP  + SY
Sbjct: 392 SQRTHIKTEQLSPSHYSEQQQHSPQQIAYSPFNLPHYSPSY 432


>S74506-1|AAB32870.1|  509|Homo sapiens inactivating mutations
           associated with campomelic dysplasia and autosomal XY se
           protein.
          Length = 509

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 397 NQRTILTTVTVLPLHLQEFNQHLPRRLVHPEWSLPPLNSSY 519
           +QRT + T  + P H  E  QH P+++ +  ++LP  + SY
Sbjct: 392 SQRTHIKTEQLSPSHYSEQQQHSPQQIAYSPFNLPHYSPSY 432


>BT006875-1|AAP35521.1|  509|Homo sapiens SRY (sex determining
           region Y)-box 9 (campomelic dysplasia, autosomal
           sex-rever protein.
          Length = 509

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 397 NQRTILTTVTVLPLHLQEFNQHLPRRLVHPEWSLPPLNSSY 519
           +QRT + T  + P H  E  QH P+++ +  ++LP  + SY
Sbjct: 392 SQRTHIKTEQLSPSHYSEQQQHSPQQIAYSPFNLPHYSPSY 432


>BC056420-1|AAH56420.1|  509|Homo sapiens SRY (sex determining
           region Y)-box 9 (campomelic dysplasia, autosomal
           sex-rever protein.
          Length = 509

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 397 NQRTILTTVTVLPLHLQEFNQHLPRRLVHPEWSLPPLNSSY 519
           +QRT + T  + P H  E  QH P+++ +  ++LP  + SY
Sbjct: 392 SQRTHIKTEQLSPSHYSEQQQHSPQQIAYSPFNLPHYSPSY 432


>BC007951-1|AAH07951.1|  509|Homo sapiens SRY (sex determining
           region Y)-box 9 (campomelic dysplasia, autosomal
           sex-rever protein.
          Length = 509

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 397 NQRTILTTVTVLPLHLQEFNQHLPRRLVHPEWSLPPLNSSY 519
           +QRT + T  + P H  E  QH P+++ +  ++LP  + SY
Sbjct: 392 SQRTHIKTEQLSPSHYSEQQQHSPQQIAYSPFNLPHYSPSY 432


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,581,006
Number of Sequences: 237096
Number of extensions: 2122010
Number of successful extensions: 5002
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5002
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)