Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1116
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46996-4|CAA87095.2|  101|Caenorhabditis elegans Hypothetical pr...    48   7e-06
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z12017-1|CAA78047.1|  458|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>Z46996-4|CAA87095.2|  101|Caenorhabditis elegans Hypothetical
           protein C34C12.4 protein.
          Length = 101

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 17/32 (53%), Positives = 26/32 (81%)
 Frame = +3

Query: 168 DPCECLWNHELAMRRLISLLRQGQSYCTESEC 263
           DPCEC ++HE AM+RL+++LR  Q+ CT++ C
Sbjct: 3   DPCECFFDHESAMQRLLAMLRNSQADCTDTGC 34


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 27.1 bits (57), Expect(2) = 3.4
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +3

Query: 423 DGAPPTPPRI*STLAEATCSSR 488
           D APP PPRI S  + A  SSR
Sbjct: 267 DDAPPPPPRIASKTSVAPTSSR 288



 Score = 20.6 bits (41), Expect(2) = 3.4
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +3

Query: 366 PRRNQIQDAAKPAHNPHDRDGAPPTP 443
           P+       A+P   P  R  APP P
Sbjct: 219 PQATSATRLARPLAPPPARPAAPPPP 244


>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 27.1 bits (57), Expect(2) = 3.4
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +3

Query: 423 DGAPPTPPRI*STLAEATCSSR 488
           D APP PPRI S  + A  SSR
Sbjct: 265 DDAPPPPPRIASKTSVAPTSSR 286



 Score = 20.6 bits (41), Expect(2) = 3.4
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +3

Query: 366 PRRNQIQDAAKPAHNPHDRDGAPPTP 443
           P+       A+P   P  R  APP P
Sbjct: 217 PQATSATRLARPLAPPPARPAAPPPP 242


>Z12017-1|CAA78047.1|  458|Caenorhabditis elegans Hypothetical
           protein R08D7.1 protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 363 RPRRNQIQDAAKPAHNPHDRDGAPPTPPR 449
           R R +  +D + P    HD D +PP P R
Sbjct: 137 RNRHDSDKDNSPPRRRRHDSDNSPPRPSR 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,144,432
Number of Sequences: 27780
Number of extensions: 333064
Number of successful extensions: 811
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)