Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1115
         (425 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    48   1e-04
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    35   0.61 
UniRef50_Q4D940 Cluster: Signal recognition particle protein, pu...    34   1.4  
UniRef50_O82022 Cluster: ENBP1 protein; n=3; Papilionoideae|Rep:...    33   1.9  
UniRef50_Q7S239 Cluster: Putative uncharacterized protein NCU098...    33   2.5  
UniRef50_A4RP26 Cluster: Putative uncharacterized protein; n=1; ...    33   2.5  
UniRef50_Q6Z4I5 Cluster: DNA binding protein-like; n=4; Oryza sa...    31   7.5  
UniRef50_Q4R7K9 Cluster: Testis cDNA, clone: QtsA-14980, similar...    31   7.5  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 47.6 bits (108), Expect = 1e-04
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = -3

Query: 411 FLLLRCVDELTAHLVLSGYWSP 346
           FLLLR VDELTAHLVLSGYWSP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.1 bits (77), Expect = 0.61
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -2

Query: 214 WYLPVRTHKRSYHQ 173
           WYLP RTHKRSYH+
Sbjct: 572 WYLPARTHKRSYHR 585


>UniRef50_Q4D940 Cluster: Signal recognition particle protein,
           putative; n=2; Trypanosoma|Rep: Signal recognition
           particle protein, putative - Trypanosoma cruzi
          Length = 763

 Score = 33.9 bits (74), Expect = 1.4
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 425 FFFFFFYCL-DVWTSSQPTWC*VVTGAHRHLQRKCATHL 312
           FFFFFF C+ D    S   W  V +   RHL+R+  T +
Sbjct: 9   FFFFFFLCVCDCVPLSDSLWLAVCSNVVRHLERRVCTRM 47


>UniRef50_O82022 Cluster: ENBP1 protein; n=3; Papilionoideae|Rep:
           ENBP1 protein - Medicago truncatula (Barrel medic)
          Length = 1701

 Score = 33.5 bits (73), Expect = 1.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 133 SKNQTRKIIISVITGGRTSCESARVGTTAPPISAVK 240
           SKN+ +K  + ++T G T C SA VGTT   +   K
Sbjct: 317 SKNKIKKKEVDLVTNGETVCGSANVGTTVEILETEK 352


>UniRef50_Q7S239 Cluster: Putative uncharacterized protein
           NCU09875.1; n=2; Sordariales|Rep: Putative
           uncharacterized protein NCU09875.1 - Neurospora crassa
          Length = 520

 Score = 33.1 bits (72), Expect = 2.5
 Identities = 22/56 (39%), Positives = 30/56 (53%)
 Frame = +1

Query: 55  GTNFSNEIRTQQMFTIDFHGEGITSCSKNQTRKIIISVITGGRTSCESARVGTTAP 222
           G + +  I T     +DFH E +TSC++N  RKIII  +T G    E   +G  AP
Sbjct: 91  GRDVTVVIPTVDPLGVDFH-ECLTSCARNGPRKIII--VTAGEDLYEKT-LGAVAP 142


>UniRef50_A4RP26 Cluster: Putative uncharacterized protein; n=1;
           Magnaporthe grisea|Rep: Putative uncharacterized protein
           - Magnaporthe grisea (Rice blast fungus) (Pyricularia
           grisea)
          Length = 400

 Score = 33.1 bits (72), Expect = 2.5
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -1

Query: 347 HRHLQRKCATHLEI*VL--RSQYSHNGCPTLQTETHYCFTAEIGGAVVPTRADSQEVLPP 174
           H H  R C+T + +      S +S +G PT+Q +T    T        P  AD Q+  P 
Sbjct: 20  HHHGLRACSTCIRLTEAPDESAFSVHG-PTMQPQTASALTEIPTSTTKPAAADQQDKPPV 78

Query: 173 VITEIII 153
           VITE+ +
Sbjct: 79  VITEMAV 85


>UniRef50_Q6Z4I5 Cluster: DNA binding protein-like; n=4; Oryza
           sativa|Rep: DNA binding protein-like - Oryza sativa
           subsp. japonica (Rice)
          Length = 544

 Score = 31.5 bits (68), Expect = 7.5
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 52  AGTNFSNEIRTQQMFTIDFHGEGITSC-SKNQTRKIIISVITGGRTSCESARVGTTAPPI 228
           +GT+   +    ++  +D  G GIT+C  +N+ +K   S++ G      + RV      +
Sbjct: 29  SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKL 88

Query: 229 SAV 237
           +AV
Sbjct: 89  NAV 91


>UniRef50_Q4R7K9 Cluster: Testis cDNA, clone: QtsA-14980, similar to
           human mitochondrial ribosomal protein S31 (MRPS31),
           nucleargene encoding mitochondrial protein,; n=6;
           Eutheria|Rep: Testis cDNA, clone: QtsA-14980, similar to
           human mitochondrial ribosomal protein S31 (MRPS31),
           nucleargene encoding mitochondrial protein, - Macaca
           fascicularis (Crab eating macaque) (Cynomolgus monkey)
          Length = 344

 Score = 31.5 bits (68), Expect = 7.5
 Identities = 21/74 (28%), Positives = 31/74 (41%)
 Frame = +1

Query: 4   VRCIRIERCSGVRIPQAGTNFSNEIRTQQMFTIDFHGEGITSCSKNQTRKIIISVITGGR 183
           VR   I+RC G             +RT +  T     E   S  +N T+K ++ +I G +
Sbjct: 41  VRMKNIQRCFGTNSVICSKKDEQSVRTDE--TSKETSESQASAKEN-TKKDLLDIIKGMK 97

Query: 184 TSCESARVGTTAPP 225
               +  V TT PP
Sbjct: 98  VELSTVNVQTTKPP 111


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 442,877,240
Number of Sequences: 1657284
Number of extensions: 8352857
Number of successful extensions: 17756
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17740
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20232460752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)