Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1115
(425 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00063-3|AAK18959.2| 446|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z82060-4|CAB04885.2| 434|Caenorhabditis elegans Hypothetical pr... 27 5.6
Z46794-6|CAA86776.1| 416|Caenorhabditis elegans Hypothetical pr... 27 7.4
AL034489-1|CAA22461.1| 538|Caenorhabditis elegans Hypothetical ... 27 7.4
Z82280-8|CAB05269.3| 280|Caenorhabditis elegans Hypothetical pr... 26 9.8
Z73098-8|CAA97334.2| 303|Caenorhabditis elegans Hypothetical pr... 26 9.8
U80955-5|AAG01559.2| 573|Caenorhabditis elegans Ferm domain (pr... 26 9.8
U80955-4|ABB51180.1| 589|Caenorhabditis elegans Ferm domain (pr... 26 9.8
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec... 26 9.8
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l... 26 9.8
>U00063-3|AAK18959.2| 446|Caenorhabditis elegans Hypothetical
protein F56C9.3 protein.
Length = 446
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 293 TLELISQGVWRIYVVDVYGLQ*PLNTRW 376
+++LI V RI+ VYG++ P+N W
Sbjct: 218 SVQLIISSVRRIHDAAVYGIKDPINVSW 245
>Z82060-4|CAB04885.2| 434|Caenorhabditis elegans Hypothetical
protein T27F6.6 protein.
Length = 434
Score = 27.1 bits (57), Expect = 5.6
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Frame = +1
Query: 7 RC-IRIERCSGV--RIPQAGTNFSNEIRTQQMFTID---FHGEGITSCSKNQTRKI-IIS 165
RC +++E C +IP N+S+ + + FTID H + + + N+ I I
Sbjct: 293 RCNVKLEECEITLNQIPGEDLNYSDHVGLRARFTIDDRFRHEKSVNTWEPNRPLLIEAIG 352
Query: 166 VITGGRTSCESARV 207
++ GG + R+
Sbjct: 353 LVAGGERRARTDRI 366
>Z46794-6|CAA86776.1| 416|Caenorhabditis elegans Hypothetical
protein R06F6.6 protein.
Length = 416
Score = 26.6 bits (56), Expect = 7.4
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 284 SHNGCPTLQTETHYCFTAEIGGAVVPTRADSQEVLPPVITEIIILRV 144
S + PT T + +I A PT ADS + PP E II ++
Sbjct: 211 SSDSTPTPTQATQFDMPTQIQTASPPTTADS-AIFPPTSPESIIQKI 256
>AL034489-1|CAA22461.1| 538|Caenorhabditis elegans Hypothetical
protein Y7A5A.1 protein.
Length = 538
Score = 26.6 bits (56), Expect = 7.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 6 PVHSYRAMQRCSNPAGGYQF 65
P H+ RAM++ + GGY F
Sbjct: 459 PTHAMRAMEKFTRDVGGYSF 478
>Z82280-8|CAB05269.3| 280|Caenorhabditis elegans Hypothetical
protein R05A10.8 protein.
Length = 280
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 352 EPIDIYNVNAPHTLRYKF 299
E +IYN NA H LR+K+
Sbjct: 43 EVFNIYNANAIHELRFKY 60
>Z73098-8|CAA97334.2| 303|Caenorhabditis elegans Hypothetical
protein T21C9.7 protein.
Length = 303
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 269 PTLQTETHYCFTAEIGGAVVPTRADSQEVLPPVITEIII 153
P ++ ++ +GG T A+S EVL ++T +I+
Sbjct: 149 PIATNNAYFIYSPTLGGFATKTVANSTEVLNSLVTFMIV 187
>U80955-5|AAG01559.2| 573|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 2,
isoform a protein.
Length = 573
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 16 RIERCSGVRIPQAGTNFSNEIRTQQMFTIDFH 111
R + C G QA N+ N+ R +M+ +D H
Sbjct: 197 RYKACRGQTPAQAELNYLNKARWIEMYGVDMH 228
>U80955-4|ABB51180.1| 589|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 2,
isoform b protein.
Length = 589
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 16 RIERCSGVRIPQAGTNFSNEIRTQQMFTIDFH 111
R + C G QA N+ N+ R +M+ +D H
Sbjct: 213 RYKACRGQTPAQAELNYLNKARWIEMYGVDMH 244
>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin
receptor protein 2 protein.
Length = 1338
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -3
Query: 150 AGLI-FTARCYSFTVEVNRE 94
+GLI F +RCYS T+E N +
Sbjct: 332 SGLIQFDSRCYSMTIETNEK 351
>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
protein LAT-2 protein.
Length = 1338
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -3
Query: 150 AGLI-FTARCYSFTVEVNRE 94
+GLI F +RCYS T+E N +
Sbjct: 332 SGLIQFDSRCYSMTIETNEK 351
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,282,059
Number of Sequences: 27780
Number of extensions: 203162
Number of successful extensions: 386
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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