Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1113
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1555 - 27669981-27670148,27670232-27670315,27670349-276703... 30 1.6
06_03_1347 - 29492460-29494685 30 1.6
03_02_0521 - 9093932-9094252 30 2.1
02_02_0444 + 10340927-10341063,10341157-10341241,10341480-103415... 30 2.1
06_03_1105 - 27634787-27636025 29 2.8
09_06_0175 + 21350528-21351136 29 4.8
09_02_0601 + 11112201-11112386,11112471-11114080,11114345-111145... 29 4.8
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437... 29 4.8
01_06_0922 - 33022709-33023545 29 4.8
01_03_0083 - 12282531-12282860 29 4.8
05_07_0327 - 29275916-29276017,29276101-29276283,29276392-292764... 28 6.4
03_06_0778 - 36188675-36188922,36189154-36189214,36189531-361896... 28 6.4
04_04_0139 - 23068868-23069280,23069729-23069831,23070221-23070562 28 8.5
01_01_0474 - 3488739-3488876,3488996-3489118,3489878-3489991,349... 28 8.5
>07_03_1555 -
27669981-27670148,27670232-27670315,27670349-27670360,
27670683-27670761,27670840-27671078,27671167-27671260,
27671342-27671484,27671688-27671786,27671870-27671998,
27672123-27672197,27672308-27672520,27672581-27672676,
27673282-27673380,27673600-27673839,27674212-27674322,
27674429-27674626,27674720-27674835,27675076-27675193,
27675761-27675866,27675972-27676030,27676259-27676388,
27676730-27676887,27677672-27677887,27677972-27678082,
27678313-27678472,27679364-27679509,27679603-27679695,
27680610-27680706,27681224-27681294,27681407-27681505,
27682037-27682168,27682287-27682729,27683252-27683564,
27684301-27684549
Length = 1631
Score = 30.3 bits (65), Expect = 1.6
Identities = 31/83 (37%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +1
Query: 52 LPRQGARAPALPSREARPLPRQGSSAPTLP-RGETRAIPRRS*GARTAALPRCEARRCPR 228
LPR A A P+ PLPR +AP L R R+ RR T A P ARR
Sbjct: 4 LPRAAAAAAPSPAAALLPLPR---AAPLLAGRAAARSAARRLRARGTRAPPLAAARR--- 57
Query: 229 QGARRQALPRACACSLPRREASA 297
PRA LPRR +A
Sbjct: 58 --GWGGVSPRA-VLDLPRRREAA 77
>06_03_1347 - 29492460-29494685
Length = 741
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 274 RSRHMHGVGPVDGHLDGDTDVLHNGVGLRYG 182
R R + GVG ++GH G+ D +GLR G
Sbjct: 41 RRRELRGVGGMEGHRRGEADDEEEELGLRLG 71
>03_02_0521 - 9093932-9094252
Length = 106
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 190 AALPRCEARRCPRQGARRQALPRACACSLP 279
AA ARR PR+G + LPR A +LP
Sbjct: 2 AARRSAAARRLPRRGREKSGLPRKTASTLP 31
>02_02_0444 +
10340927-10341063,10341157-10341241,10341480-10341537,
10343738-10345885,10345943-10346388
Length = 957
Score = 29.9 bits (64), Expect = 2.1
Identities = 34/101 (33%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Frame = -3
Query: 394 GNGHGLLNVHGVRPVDRNMDGVGHWLLNWDSKRHWLLDGVRSRHM-HGVGPVDGHLDGDT 218
G G L + + +D D VG L + WL DG + G G VDG LDG
Sbjct: 345 GGGGWLYDGATIEGLDGGGDVVGGGL---NGGGGWLYDGATVGGLDEGGGVVDGGLDGGG 401
Query: 217 DVLHNGVGLRYGHLNFDGVWHVFLHGVRLGHWNLDGVGDVL 95
+VL G+ G G W G +G LDG GDV+
Sbjct: 402 EVLDGGLDEGGG-----GGW--LYDGGTVG--GLDGGGDVV 433
Score = 29.9 bits (64), Expect = 2.1
Identities = 42/139 (30%), Positives = 52/139 (37%), Gaps = 7/139 (5%)
Frame = -3
Query: 490 VNGHFDGNGDWPVDRVRXXXXXXXXXXXXXLYGNGHGLLNV---HGVRPVDRNMDGVGHW 320
V G DG G W D G +L G V ++G G
Sbjct: 765 VGGGLDGGGGWLYDGATVGGLVEGGGVVGGGLDGGGKVLGGGLDEGGDVVGGGLNGGGEE 824
Query: 319 L---LNWDSKRHWLLDGVRSRHMHGVGP-VDGHLDGDTDVLHNGVGLRYGHLNFDGVWHV 152
L L+ WL DG ++G G VDG LDG DV+ G GL G G W
Sbjct: 825 LGGGLDEGGGGDWLYDGGTVGGLYGGGEAVDGVLDGGGDVM--GGGLDGGG---GGDW-- 877
Query: 151 FLHGVRLGHWNLDGVGDVL 95
G +G LDG G+V+
Sbjct: 878 LYDGATVG--GLDGGGEVV 894
Score = 29.1 bits (62), Expect = 3.7
Identities = 36/103 (34%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Frame = -3
Query: 394 GNGHGLLNVHGVRPVDRNMDGVGHWLLNWDSKRHWLLDGVRSRHM-HGVGPVDGHLDGDT 218
G G L + V +D D VG L D WL DG + G G V G LDG
Sbjct: 238 GGGGCLYDGATVGGLDGGGDVVGGGL---DGGGGWLYDGATVGGLDEGGGVVGGGLDGGG 294
Query: 217 DVLHNGV--GLRYGHLNFDGVWHVFLHGVRLGHWNLDGVGDVL 95
DVL G+ G G L G G + LDG G+VL
Sbjct: 295 DVLGGGLDEGGGGGWLYDGGTVGGLDGGGGVVGGGLDGGGEVL 337
>06_03_1105 - 27634787-27636025
Length = 412
Score = 29.5 bits (63), Expect = 2.8
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Frame = +1
Query: 49 ALPRQGARAPALPSREARPLPRQGSSAPTLP-RGETRAIPRRS*GARTAALPRCEARRCP 225
A+P A AP P EA P P S P P R T A+ + P C +R
Sbjct: 103 AVPEMDAAAPRPPQPEAMPAP----SEPMKPLRAATAAVDAADPYVFSPKAPSCSSRWRE 158
Query: 226 RQGARRQAL--PRACACSLPRR 285
G +R A P+ S P R
Sbjct: 159 LLGLKRAAAQSPKPSPSSAPAR 180
>09_06_0175 + 21350528-21351136
Length = 202
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +1
Query: 61 QGARAPALPSREARPLPRQGSSAPTLPRGETRAI--PRRS*GARTAALPRCEARRCPRQG 234
+GAR P R ARP P PR RA+ R GAR PR +R P
Sbjct: 46 RGARRCVRPRRGARPPPLHHQQP---PRRRRRAVEESRGGGGARRVRSPRTPSRP-PNST 101
Query: 235 ARRQALPRACA 267
+ R+ PR A
Sbjct: 102 SARRRRPRDAA 112
>09_02_0601 +
11112201-11112386,11112471-11114080,11114345-11114579,
11115233-11115358
Length = 718
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/77 (32%), Positives = 32/77 (41%)
Frame = +1
Query: 25 SRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPTLPRGETRAIPRRS*GARTAALPR 204
S T +S QA+ A APA PS P PR SS P L + P S + L
Sbjct: 397 SSTPSSSQAMT---AAAPAPPSPPEPPSPRHPSSPPPLRSPPRQPTPPPSPSQQPPLLAP 453
Query: 205 CEARRCPRQGARRQALP 255
+ P A++ A P
Sbjct: 454 QPVQASPTSPAKQHAPP 470
>04_04_1105 -
30942735-30942791,30943116-30943466,30943670-30943762,
30943869-30944072,30944155-30944399,30945019-30945877,
30946070-30946936,30947113-30947562
Length = 1041
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Frame = +1
Query: 46 QALPRQGARAPALPSREARPLPRQGSSA--PTLPRGETRAIPRRS*GARTAALPRCEA 213
Q+LP AP P R A PLPR + A LP G + G A P C A
Sbjct: 52 QSLPPDLMPAPPPPRRRALPLPRGAADARGARLPCGSCGELLSVPVGLSRCACPLCGA 109
>01_06_0922 - 33022709-33023545
Length = 278
Score = 28.7 bits (61), Expect = 4.8
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Frame = +1
Query: 70 RAPALPSREARPLPRQGSSAPTLPRGETRAIPR---RS*GARTAALPRCEARRCPR-QGA 237
R+P P+R RP+ G A + R + A RS AR +A P RR R +
Sbjct: 122 RSPGKPARRKRPVSVSGELAHAISRRDRAAAAAYGVRSRSARASASP--PPRREQRDRSV 179
Query: 238 RRQALPRACACSLPRREAS 294
RR P A RR AS
Sbjct: 180 RRSPSPAAKRTPEQRRAAS 198
>01_03_0083 - 12282531-12282860
Length = 109
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +1
Query: 190 AALPRCEARRCPRQGARRQALPRACACSLPRREA 291
AA ARR PR+G R LPR +LP A
Sbjct: 2 AARRSAAARRLPRRGRGRSGLPRKTPSTLPSSPA 35
>05_07_0327 -
29275916-29276017,29276101-29276283,29276392-29276453,
29276590-29276671,29276922-29276987,29277297-29277359,
29277466-29277570,29277678-29277887,29277988-29278103,
29278875-29279082
Length = 398
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 550 RDWLLDCYGHVPLNSYGVGPVNGHFDGNGDWPVDR 446
+D L+D Y +VP YG+ P N D P DR
Sbjct: 67 KDGLMDNYKNVPQFLYGLSPAQIEMFMNDDNPYDR 101
>03_06_0778 -
36188675-36188922,36189154-36189214,36189531-36189635,
36189731-36189835,36189916-36189997,36190337-36190536,
36190635-36190796,36190926-36191035,36191133-36191256,
36191408-36191674
Length = 487
Score = 28.3 bits (60), Expect = 6.4
Identities = 22/73 (30%), Positives = 28/73 (38%)
Frame = +1
Query: 73 APALPSREARPLPRQGSSAPTLPRGETRAIPRRS*GARTAALPRCEARRCPRQGARRQAL 252
A PSR RP + G T P + A P +ARRCPR+ + R+
Sbjct: 15 AAQAPSR--RPPQQLGHVVATRPPSPPAGLSPEGPDLAGATTPAVKARRCPRRSSLRERE 72
Query: 253 PRACACSLPRREA 291
A A R A
Sbjct: 73 SLATAVPAAARLA 85
>04_04_0139 - 23068868-23069280,23069729-23069831,23070221-23070562
Length = 285
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +1
Query: 97 ARPLPRQGSSAPTLPRGETRAIPRRS*GARTAALPRCEAR---RCPRQGARRQALPRA 261
A PLP S+P R A+PRR A+L +C AR PR+ A R P A
Sbjct: 11 AFPLPLCAVSSPR--RATPLALPRRGAARPLASLAQCPARGHSPSPRRAAGRALAPCA 66
>01_01_0474 -
3488739-3488876,3488996-3489118,3489878-3489991,
3490416-3490452,3490584-3490675,3490878-3490956,
3491640-3491734,3491858-3491991,3492560-3492833,
3493743-3494015,3494976-3495512
Length = 631
Score = 27.9 bits (59), Expect = 8.5
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 19 ALSRTRTS*QALPRQGARAPALPSREARPLPRQG-SSAPTLPRGETRAIPRRS*GARTAA 195
ALS +R + AL R+ P LPSR A P+PR S P+ +R AR
Sbjct: 4 ALSSSRRALHALHRRLLLHP-LPSRHAPPIPRHHFPSPPSSSSSSSRFFTTTRPDAR--- 59
Query: 196 LPRCEARRCPRQGAR 240
L + ARR GAR
Sbjct: 60 LLQLHARRLVVGGAR 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,753,010
Number of Sequences: 37544
Number of extensions: 300849
Number of successful extensions: 1139
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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