Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1113
(714 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78410-8|CAB01642.1| 556|Caenorhabditis elegans Hypothetical pr... 31 0.82
Z78410-7|CAB01635.1| 652|Caenorhabditis elegans Hypothetical pr... 31 0.82
U04995-1|AAA56868.1| 652|Caenorhabditis elegans prohormone conv... 31 0.82
U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical pr... 29 3.3
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 29 4.4
Z81543-6|CAB04428.2| 1082|Caenorhabditis elegans Hypothetical pr... 28 5.8
AL132876-39|CAL49440.1| 1082|Caenorhabditis elegans Hypothetical... 28 5.8
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 28 5.8
U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical pr... 28 7.6
DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determini... 28 7.6
>Z78410-8|CAB01642.1| 556|Caenorhabditis elegans Hypothetical
protein C51E3.7b protein.
Length = 556
Score = 31.1 bits (67), Expect = 0.82
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = -3
Query: 304 SKRHWLLDGVRSRHMHGVGPVDGHLDGDTDVLH-----NGVGLRYGHLNFDGV 161
S R+ L DG R R +G D H D + H NGVGL Y HL GV
Sbjct: 327 SSRNSLFDG-RCRDFPSLGINDNHRDSHGNCSHFEWQMNGVGLEYNHLFGFGV 378
>Z78410-7|CAB01635.1| 652|Caenorhabditis elegans Hypothetical
protein C51E3.7a protein.
Length = 652
Score = 31.1 bits (67), Expect = 0.82
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = -3
Query: 304 SKRHWLLDGVRSRHMHGVGPVDGHLDGDTDVLH-----NGVGLRYGHLNFDGV 161
S R+ L DG R R +G D H D + H NGVGL Y HL GV
Sbjct: 423 SSRNSLFDG-RCRDFPSLGINDNHRDSHGNCSHFEWQMNGVGLEYNHLFGFGV 474
>U04995-1|AAA56868.1| 652|Caenorhabditis elegans prohormone
convertase 2 protein.
Length = 652
Score = 31.1 bits (67), Expect = 0.82
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = -3
Query: 304 SKRHWLLDGVRSRHMHGVGPVDGHLDGDTDVLH-----NGVGLRYGHLNFDGV 161
S R+ L DG R R +G D H D + H NGVGL Y HL GV
Sbjct: 423 SSRNSLFDG-RCRDFPSLGINDNHRDSHGNCSHFEWQMNGVGLEYNHLFGFGV 474
>U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical
protein F35A5.5 protein.
Length = 125
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 290 PVPFAVPVEKPVAYPVHVPVDRP 358
P+P VPV PV PV VP+ P
Sbjct: 8 PIPAPVPVPAPVPQPVPVPMPMP 30
Score = 23.8 bits (49), Expect(2) = 4.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 449 VDRPVAVPVKVPVDRPYPVTV 511
V +PV VP+ +P+ P P+ V
Sbjct: 19 VPQPVPVPMPMPMPMPMPMPV 39
Score = 23.4 bits (48), Expect(2) = 4.5
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +2
Query: 290 PVPFAVPVEKPVAYPVHVPVDRP 358
P P +P+ PV P VP P
Sbjct: 2 PPPIPIPIPAPVPVPAPVPQPVP 24
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = +1
Query: 1 PSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPTLPRGETRAIP 165
P+ R T P RAP PS R R + APT PR T P
Sbjct: 308 PTTPSPTTPRATTPLATTPLATTRAPLPPSPPPRTSKRPVTQAPTTPRATTTRRP 362
>Z81543-6|CAB04428.2| 1082|Caenorhabditis elegans Hypothetical protein
F49B2.6 protein.
Length = 1082
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3
Query: 343 NMDGVGHWLLNWDSKRHWLLDGVRSRHMH 257
N +G W+ WD +R L R RH H
Sbjct: 1048 NEGQLGKWISRWDERRRTLYRRKRHRHHH 1076
>AL132876-39|CAL49440.1| 1082|Caenorhabditis elegans Hypothetical
protein F49B2.6 protein.
Length = 1082
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3
Query: 343 NMDGVGHWLLNWDSKRHWLLDGVRSRHMH 257
N +G W+ WD +R L R RH H
Sbjct: 1048 NEGQLGKWISRWDERRRTLYRRKRHRHHH 1076
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 2 PVEKKVPYPVHVPVDRPYPVKVLVP 76
PV +VP P+ VPV P P V P
Sbjct: 159 PVPVQVPVPIRVPVPVPVPTPVYQP 183
>U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical
protein F52C9.7 protein.
Length = 451
Score = 27.9 bits (59), Expect = 7.6
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Frame = +1
Query: 1 PSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSS----APTLPRGETRAIPR 168
P R+ + R ++ R+ R+P E+R L R+ SS +P R + R + R
Sbjct: 160 PKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKPSSSRSKSPRRSREDPRKVAR 219
Query: 169 RS*GARTAALPRCEARRCPRQGARRQALPRACACSLPR 282
+ +R+ + R RR R R + PR + S R
Sbjct: 220 KPSRSRSRSAER--LRRKSRSPRRSREEPRKMSRSRSR 255
>DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determining
protein MOG-3 protein.
Length = 451
Score = 27.9 bits (59), Expect = 7.6
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Frame = +1
Query: 1 PSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSS----APTLPRGETRAIPR 168
P R+ + R ++ R+ R+P E+R L R+ SS +P R + R + R
Sbjct: 160 PKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKPSSSRSKSPRRSREDPRKVAR 219
Query: 169 RS*GARTAALPRCEARRCPRQGARRQALPRACACSLPR 282
+ +R+ + R RR R R + PR + S R
Sbjct: 220 KPSRSRSRSAER--LRRKSRSPRRSREEPRKMSRSRSR 255
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,740,991
Number of Sequences: 27780
Number of extensions: 208233
Number of successful extensions: 692
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -