Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1111
         (564 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   1.4  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         21   5.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   7.3  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   9.6  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 530 STQSGRSAAMNSSQSMRPLPFLSNR 456
           S +SG+ + + S+ +  P P LSNR
Sbjct: 118 SFESGKPSGVISTNTSPPSPILSNR 142


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 478 RYRSCRTDPPRR 443
           R R+ RT+PPRR
Sbjct: 234 RPRTSRTEPPRR 245



 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 37  SRRFSRISPGRETPDRNLPHYGPR 108
           SR   +   GRE   R  P+Y PR
Sbjct: 213 SRSKRQPKTGREDQTRRNPYYRPR 236


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/20 (30%), Positives = 10/20 (50%)
 Frame = +3

Query: 48  QSYQPWTGDARSEPAPLRTP 107
           + + PW    +  P+P  TP
Sbjct: 62  KGFHPWKKSPQGAPSPSSTP 81



 Score = 20.6 bits (41), Expect = 9.6
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +1

Query: 193 WLLAWERQRRLHERLAHLKELQRVSNFSWDDWRKRFLK 306
           WL   +R  R  E   HL+       F+     KRF++
Sbjct: 349 WLFCGKRFTRSDELQRHLRTHTGEKRFACPICNKRFMR 386


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 6/24 (25%), Positives = 14/24 (58%)
 Frame = +1

Query: 202 AWERQRRLHERLAHLKELQRVSNF 273
           AW++   + ++ A++ E    SN+
Sbjct: 547 AWDKFTNMQQQFAYIDESSNSSNY 570


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,003
Number of Sequences: 336
Number of extensions: 2702
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)