Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1110
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    29   0.53 
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    28   1.2  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    28   1.2  
SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ...    27   2.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   6.5  

>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 451 SSRRYRGRVSRLYTEQAPSLPPQQF 377
           + R  RG+V RLYTE+A SL  ++F
Sbjct: 354 AGRTMRGKVFRLYTEKAYSLMKEEF 378


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 181 SLHRYLRNYVLHKIL--CHRCPFCLVSSLRLPSVCLSPPW 68
           SL     N V H +L  C +     +SS ++P VC+SP W
Sbjct: 194 SLQMTEENPVSHAVLYDCSQETLKKISSAQVPIVCVSPKW 233


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 476 PYLSPTPLKRKFPLPSRNTSNTQY 547
           P++SP+P+  K  +PS N  N+ +
Sbjct: 212 PFVSPSPISMKMDMPSLNDRNSSH 235


>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 324

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 522 DGKGNFLFNGVGLRYGHFHLIGYFLLDGIGDV 427
           DG  +FL N  GLRYG         +D  G++
Sbjct: 110 DGTASFLINPYGLRYGEITASSLIKVDEDGNI 141


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 94  PSVCLSPPWQRQPRPTMPPK*PCTS 20
           P   L PP    PRP++PP  P ++
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPASA 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.135    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,839,907
Number of Sequences: 5004
Number of extensions: 35095
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)