Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1109
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U68266-1|AAB16981.1|  219|Caenorhabditis elegans RAB-3 protein.        31   0.61 
U68265-1|AAB16980.1|  219|Caenorhabditis elegans RAB-3 protein.        31   0.61 
U28944-15|AAK68196.1|  219|Caenorhabditis elegans Rab family pro...    31   0.61 
U28944-14|AAK68195.1|  233|Caenorhabditis elegans Rab family pro...    31   0.61 
AB112928-1|BAD07033.1|  219|Caenorhabditis elegans Rab3 protein.       31   0.61 
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe...    29   4.3  
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe...    29   4.3  
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty...    29   4.3  
Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AL132943-3|CAB81974.1|  345|Caenorhabditis elegans Hypothetical ...    28   7.5  
AF016417-3|AAB65281.1|  457|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical p...    27   9.9  
Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AL032637-4|CAA21619.2|  534|Caenorhabditis elegans Hypothetical ...    27   9.9  

>U68266-1|AAB16981.1|  219|Caenorhabditis elegans RAB-3 protein.
          Length = 219

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +1

Query: 25  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 180
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


>U68265-1|AAB16980.1|  219|Caenorhabditis elegans RAB-3 protein.
          Length = 219

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +1

Query: 25  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 180
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


>U28944-15|AAK68196.1|  219|Caenorhabditis elegans Rab family
           protein 3, isoform b protein.
          Length = 219

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +1

Query: 25  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 180
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


>U28944-14|AAK68195.1|  233|Caenorhabditis elegans Rab family
           protein 3, isoform a protein.
          Length = 233

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +1

Query: 25  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 180
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 158 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 206


>AB112928-1|BAD07033.1|  219|Caenorhabditis elegans Rab3 protein.
          Length = 219

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +1

Query: 25  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 180
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defective
            protein 19,isoform a protein.
          Length = 1783

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = +1

Query: 79   LIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKKIRNYYLK--KICI 252
            L ++   E   D + S S++ + + CD ++D     G++++R  N     Y++    +C 
Sbjct: 1295 LFRSATGEAWQDIMLSCSDR-EDVRCDPMSDDYHKGGLNESRCGNNFAYPYFISFFMLCS 1353

Query: 253  LLDLN-FKHVIESSFD 297
             L +N F  VI  +FD
Sbjct: 1354 FLVINLFVAVIMDNFD 1369


>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defective
            protein 19,isoform b protein.
          Length = 1877

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = +1

Query: 79   LIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKKIRNYYLK--KICI 252
            L ++   E   D + S S++ + + CD ++D     G++++R  N     Y++    +C 
Sbjct: 1295 LFRSATGEAWQDIMLSCSDR-EDVRCDPMSDDYHKGGLNESRCGNNFAYPYFISFFMLCS 1353

Query: 253  LLDLN-FKHVIESSFD 297
             L +N F  VI  +FD
Sbjct: 1354 FLVINLFVAVIMDNFD 1369


>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
            calcium channelalpha 1 subunit protein.
          Length = 1783

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = +1

Query: 79   LIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKKIRNYYLK--KICI 252
            L ++   E   D + S S++ + + CD ++D     G++++R  N     Y++    +C 
Sbjct: 1295 LFRSATGEAWQDIMLSCSDR-EDVRCDPMSDDYHKGGLNESRCGNNFAYPYFISFFMLCS 1353

Query: 253  LLDLN-FKHVIESSFD 297
             L +N F  VI  +FD
Sbjct: 1354 FLVINLFVAVIMDNFD 1369


>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 280 IESSFDKNHIVAKLCDATRAKEWQT 354
           +ES++DK H + + C  T + +W T
Sbjct: 131 VESAWDKTHQLFECCGVTNSSDWLT 155


>AL132943-3|CAB81974.1|  345|Caenorhabditis elegans Hypothetical
           protein Y116F11B.6 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 85  KTQIDENVSDNIKSMSEKLKRLECDNLTDS-VEIYGIHDNRLNNKKI 222
           K +I E+V +NIK    KLK++E  NL +S  E+   H   LN K++
Sbjct: 219 KIRIIEDV-ENIKKQDVKLKKIE-KNLKESRKELKEAHQEYLNRKEL 263


>AF016417-3|AAB65281.1|  457|Caenorhabditis elegans Hypothetical
           protein F17A9.4 protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 154 CDNLTDSVEIYGIHDNRLNNKKIRNYYLK 240
           CDNLT S +I G   N  N K  +N +LK
Sbjct: 7   CDNLTVSSKILGEQLNFRNGKTAQNRFLK 35


>Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical
           protein C53B4.4e protein.
          Length = 1544

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 229 YYLKKICILLDLNFKHVIESSFDKNHIVAK 318
           Y ++KI  +LD+++    E+S D + I+AK
Sbjct: 318 YCIQKIVFILDIDYSGGFETSIDVSTIIAK 347


>Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical
           protein C53B4.4b protein.
          Length = 1586

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 229 YYLKKICILLDLNFKHVIESSFDKNHIVAK 318
           Y ++KI  +LD+++    E+S D + I+AK
Sbjct: 318 YCIQKIVFILDIDYSGGFETSIDVSTIIAK 347


>Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical
           protein C53B4.4a protein.
          Length = 1584

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 229 YYLKKICILLDLNFKHVIESSFDKNHIVAK 318
           Y ++KI  +LD+++    E+S D + I+AK
Sbjct: 318 YCIQKIVFILDIDYSGGFETSIDVSTIIAK 347


>AL032637-4|CAA21619.2|  534|Caenorhabditis elegans Hypothetical
           protein Y43F8C.4 protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 30/128 (23%), Positives = 49/128 (38%)
 Frame = +1

Query: 217 KIRNYYLKKICILLDLNFKHVIESSFDKNHIVAKLCDATRAKEWQTKSRERRLKNFNLNI 396
           KIR   L +    L L    V E +     +V    D    ++W+TK    RLK     I
Sbjct: 292 KIRETKLSEDVAALKLEQLKVHELNLSLKDLVKNQQDENEQEKWRTKEEWNRLK-IERQI 350

Query: 397 NYDGPVKIFVAATAEQKLLLKKTRDALLPFYKYISICKNGVMVRRDEKSRVFIVKNEQNI 576
             +   ++      E+  L  K +       + +    +   +   EKS  F  K +Q+I
Sbjct: 351 FKENQDRVIENVQREKLDLANKLKFYHKDQTELLFRLSSERELLEQEKSE-FFAKRDQDI 409

Query: 577 EYLKANKY 600
           + +KA  Y
Sbjct: 410 KRIKAEAY 417


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,869,258
Number of Sequences: 27780
Number of extensions: 247394
Number of successful extensions: 871
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)