Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1109
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36240.1 68415.m04448 pentatricopeptide (PPR) repeat-containi...    29   4.0  
At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein ...    28   6.9  
At2g23810.1 68415.m02843 senescence-associated family protein si...    27   9.2  
At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family pro...    27   9.2  

>At2g36240.1 68415.m04448 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 379

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 250 ILLDLNFKHVIESSFDKNHIVAKLCDATRA 339
           ++LDL  K V+ S FD   +V KLC   +A
Sbjct: 202 LVLDLLNKRVLPSEFDYGSLVEKLCGENKA 231


>At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 455

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = +1

Query: 82  IKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKK 219
           I+T ++EN +D+ +  ++KLK ++ +    S   YG+ +N   NK+
Sbjct: 28  IRTHMNENSADSDEDEADKLKMIDENGGQSS---YGLRENPKKNKR 70


>At2g23810.1 68415.m02843 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 195

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 196 DNRLNNKKIRNYYLK-KICILLDLNFKHVIESSFDKNHIVA 315
           +N  N  KIR+  ++ K+C  L+  F +V  +SF K H+ A
Sbjct: 49  ENGKNWNKIRSCLVESKVCSKLEAKFVNVPVNSFYKEHLTA 89


>At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family
           protein contains Pfam domain, PF05183: RNA dependent RNA
           polymerase
          Length = 927

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +1

Query: 481 PFYKYISICKNGVMVRRDEKSRVFIVKNEQNIEYLKAN-----KYYAFHSDSVDNFEFEN 645
           P+ KY  I KNG+MV    + + F+ K+    E  K N     K Y   + S  + + EN
Sbjct: 267 PYSKYKEIAKNGIMVGL-RRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMEN 325


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,605,733
Number of Sequences: 28952
Number of extensions: 209113
Number of successful extensions: 620
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)