Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1108
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 38 0.001
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 37 0.002
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 33 0.027
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 5.3
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos... 26 5.3
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 7.1
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 25 9.3
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 25 9.3
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 9.3
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 9.3
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/60 (31%), Positives = 36/60 (60%)
Frame = +1
Query: 355 NTSSFGALAHLLKASLGSGVLAMPLAFKNAGLLVGCIGTMLIGLICGHVIHILVKTSQQL 534
N S+ A+ LLK+ +G+GVL +P AFK GL+ +++G++ +L++T ++
Sbjct: 274 NASNGKAVLLLLKSFVGTGVLFLPKAFKLGGLVFSSATLLIVGVLSHICFLLLIQTRMKV 333
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +1
Query: 313 MGPYVPANHRPMESNTSS---FGALAHLLKASLGSGVLAMPLAFKNAGLLVGCI 465
M Y P + P + + F ++ +L LG+G+L++P AF GLL GC+
Sbjct: 1 MSGYSPLSSGPADVHIGKAGFFSSVINLANTILGAGILSLPNAFTKTGLLFGCL 54
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 33.5 bits (73), Expect = 0.027
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = -2
Query: 614 PYRFRSVLEDDFACVSVA*SWFFTSTQSCCDVFTKICI-----TCPQISPISIVPMQPTR 450
P + ++VLE +C++ S F C D F K + T P++SPIS+ ++ +
Sbjct: 558 PTQHKAVLEFLNSCINRCISRVFAYLDVCVDCFKKHSVNSQKKTAPEVSPISVTLIE--Q 615
Query: 449 RPAFLKANGIASTPEPRDAFSKW 381
P FL+ I+ + +DA W
Sbjct: 616 IPFFLQKRDISD--DSKDAVLSW 636
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 436 KNAGLLVGCIGTMLIGLICGHVIHILVKTSQQLCVEV 546
+NA LL+ L+GLICG ++ LC+ V
Sbjct: 561 RNAKLLIAFTILFLVGLICGWRLNRFTMFIYYLCILV 597
>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 220 KTKPSAPPIQLVMDDNYSSKIELAYNGSREDMGPYVPANH 339
+ K + P+ + D+ SKI+L G +DM P + +H
Sbjct: 178 QNKKRSQPVSQEVRDSILSKIQLEIEGLGKDMKPPIVNSH 217
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 385 LLKASLGSGVLAMPLAFKNAGLLVGCIGTMLIG 483
+LKAS+ S +L + F N+ + C+G ++ G
Sbjct: 3560 VLKASVNSALLTSWICFLNSIGAINCVGIVVSG 3592
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 25.0 bits (52), Expect = 9.3
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Frame = +1
Query: 94 AVIESAKVL*SVKCQ*RTNLKKISRYLEFQIHLISYWT*KMEKTKPSAPPIQLVMDDNYS 273
++IE V+ +V Q NLKK+S L++ + S + + K AP I YS
Sbjct: 403 SIIEVCSVMMTVYAQYLRNLKKVSEILDYITKIASDY--DLLKRDDIAPLIYHTEGVAYS 460
Query: 274 SKIELAYNGSREDM--GPYVPANHRPMESNTSSFGALAHL 387
A N S + V + + +E ++ AL HL
Sbjct: 461 FMYYQANNPSLRERYHQKSVQSYQKCLEKQPTNTNALFHL 500
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 395 AFSKWAKAPKLEVFDSIGRWFAGTYGPMSSRD 300
A KWA P+LEV ++ R F GP + +D
Sbjct: 161 ALLKWA--PQLEVKQTLDRKFLELLGPKTEQD 190
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Frame = +2
Query: 305 EKTWART---CQQTIDLWSQTPRV 367
+KTW R CQ+ +D+W + R+
Sbjct: 1469 KKTWVRRLKGCQRNVDVWQRMLRI 1492
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 452 RRPAFLKANGIASTPEPRDAFSKWAKAPKLEVF 354
R+ +L+ +G + + RD ++W P+L VF
Sbjct: 1468 RQYKYLRLDGSSKISQRRDMVTEWQTRPELFVF 1500
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,023,387
Number of Sequences: 5004
Number of extensions: 67679
Number of successful extensions: 192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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