Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1106
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    29   0.35 
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   5.8  

>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +1

Query: 235 QRQDFRSKRTET*S*SID*ASCLSTSNPSGSSTGKP*KRTGRTHKLTCRGLTDS*IPS-C 411
           Q  DF SK+ +T S + D  S    + P  S+T    +   + HKLT  G+T   I   C
Sbjct: 179 QALDFYSKQLDTTSETKDSFSFCKETLPRSSTTSYSIRDADKHHKLTTSGVTKMNITERC 238

Query: 412 PVKTLL 429
             KT +
Sbjct: 239 KPKTTI 244


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 313 NPSGSSTGKP*KRTGRTHKLTCR 381
           NP+   T KP KR  +T  LTCR
Sbjct: 18  NPNVEPTPKPTKRRTKTGCLTCR 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,091
Number of Sequences: 5004
Number of extensions: 38018
Number of successful extensions: 95
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)