Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1106
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0846 - 21983581-21986055                                         30   1.1  
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665...    30   1.5  
09_04_0579 + 18676165-18676524,18676846-18677058,18677136-186772...    27   7.7  
05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980     27   7.7  

>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 229 SSSPNLSPTATVILLGVSGNPIGLDPAKEGR*HSTSVDEVSNITTA 92
           S  P   PT   + +G  GN + LD +K  +  ST+V   SN T A
Sbjct: 81  SDVPVSDPTTASLSIGSDGNLVLLDQSKNRQLWSTNVSVASNSTVA 126


>01_06_0903 +
           32862551-32864752,32865341-32865535,32866219-32866523,
           32866664-32866849,32867137-32867314,32867548-32867574
          Length = 1030

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 171 FPDTPNRITVAVG-DRFGDDDSTTPRLPIEANGDLELI 281
           F D P R T+A     FG DDS+ PRL  E N  L+ +
Sbjct: 661 FSDNPRRQTIAAAASLFGADDSSNPRLD-ELNKTLQAL 697


>09_04_0579 +
           18676165-18676524,18676846-18677058,18677136-18677288,
           18677503-18677622,18677696-18677782,18677876-18678313
          Length = 456

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = +2

Query: 293 QAACRQATLLVHQLASLRSAQEEPTNSRAEA*RIHRSHHAQSKRCYRPSKLKRSVVSIEQ 472
           Q  C +   ++ +LA+        T+S A+A RI        ++    SKLK+ + +++Q
Sbjct: 256 QKECEEKDAIIKELAATAH-----TSSTADAKRIAELQEILKRKNMVISKLKKDMSALKQ 310

Query: 473 RVIEL 487
            V+EL
Sbjct: 311 MVVEL 315


>05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980
          Length = 681

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 222 DDDSTTPRLPIEANGDLELIDRLSKLPVDKQP 317
           DDD   P+ PI++  ++E++  + K+ V  +P
Sbjct: 232 DDDEEAPKGPIKSKHEVEVLPPVPKIDVQLEP 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,785,803
Number of Sequences: 37544
Number of extensions: 275581
Number of successful extensions: 637
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)