Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1106
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    26   0.30 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.52 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.52 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   3.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   3.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   8.5  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +3

Query: 162 PIGFPDTPNRITVAVGDRFGDDDSTTPRLPIEA--NGDLELIDRLSKLPVDKQPFWFINW 335
           P   PD    +   V +RFGDD  T  +LP++A    DL +  +L +    +QPF     
Sbjct: 34  PDYLPDRYRSVATQVFNRFGDD--TESKLPVKAITLPDLSIPMQLGR----RQPFSLF-- 85

Query: 336 QALEAHRK 359
             + AHRK
Sbjct: 86  --IPAHRK 91


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 225 DDSTTPRLPIEANGDLELIDRLSKLPVDKQPFWFINWQALEAHRKNPQTHVQRPN 389
           D+S T    I   G + L D++   P+D+ P W  N+     + K+   +  RPN
Sbjct: 628 DESNTKSYEIPLYGKMTLDDKVFGFPLDR-PMWAWNFTIPNMYFKDVFIY-NRPN 680


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 225 DDSTTPRLPIEANGDLELIDRLSKLPVDKQPFWFINWQALEAHRKNPQTHVQRPN 389
           D+S T    I   G + L D++   P+D+ P W  N+     + K+   +  RPN
Sbjct: 628 DESNTKSYEIPLYGKMTLDDKVFGFPLDR-PMWAWNFTIPNMYFKDVFIY-NRPN 680


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 342 LEAHRKNPQTHVQRP 386
           L  H ++PQTHV  P
Sbjct: 325 LNVHFRSPQTHVMAP 339


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 211 SPTATVILLGVSGNPIGLDP 152
           +P ATV L+GV GN   L P
Sbjct: 296 TPYATVALIGVYGNRELLTP 315


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 211 SPTATVILLGVSGNPIGLDP 152
           +P ATV L+GV GN   L P
Sbjct: 296 TPYATVALIGVYGNRELLTP 315


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 227 RLNNAKTSDRSERRLRVDR 283
           R++   T DR+++  R+DR
Sbjct: 497 RMDRMDTMDRTDKMSRIDR 515


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,523
Number of Sequences: 438
Number of extensions: 2438
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)