Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1106
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40140.1 68418.m04871 armadillo/beta-catenin repeat family pr...    29   1.6  
At4g01550.1 68417.m00201 no apical meristem (NAM) family protein...    28   4.9  
At2g39550.1 68415.m04852 geranylgeranyl transferase type I beta ...    27   6.5  
At1g57570.1 68414.m06533 jacalin lectin family protein similar t...    27   6.5  
At5g59710.1 68418.m07485 transcription regulator NOT2/NOT3/NOT5 ...    27   8.6  
At5g44990.1 68418.m05517 hypothetical protein                          27   8.6  

>At5g40140.1 68418.m04871 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 550

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -2

Query: 280 INSKSPFASIGSLGVVESSSPNLSPTATVILLGVSGNPIG-LDPAKEGR*HSTSVDEVSN 104
           + +K    S  S G +ES  PNL+P    +L  +  N I  ++ A       T +DE S 
Sbjct: 204 LTTKPSCFSSPSSGEIESLEPNLTPEEEALLTKLKSNRISEIEEALISIRRITRIDESSR 263

Query: 103 ITTAAT 86
           I+   T
Sbjct: 264 ISLCTT 269


>At4g01550.1 68417.m00201 no apical meristem (NAM) family protein
           similar to  NAC1 (GI:7716952) {Medicago truncatula};
           contains Pfam PF02365 : No apical meristem (NAM) protein
          Length = 457

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 279 IDRLSKLPVDKQPFWFINWQALEAHRKNPQ 368
           ID+ S +   ++  WFI  +A+E +R NP+
Sbjct: 390 IDKESSMVKTEKKSWFITEEAMERNRNNPR 419


>At2g39550.1 68415.m04852 geranylgeranyl transferase type I beta
           subunit (GGT-IB) nearly identical to GI:11878247
          Length = 375

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 186 NRITVAVGDRFGDDDSTTPRLPIEANGDLE 275
           NR+++  G+ +G   S + + PI+ NGDL+
Sbjct: 100 NRVSLKDGEFYGFFGSRSSQFPIDENGDLK 129


>At1g57570.1 68414.m06533 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 614

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 440 CLGGSSVLTGHDGIYESVRPLHVSLWVLPVRF 345
           C G S  +   DG+++ +R ++VS  V+ VR+
Sbjct: 322 CYGSSKGIYWDDGVFDFIRTVYVSSNVMNVRY 353


>At5g59710.1 68418.m07485 transcription regulator NOT2/NOT3/NOT5
           family protein contains Pfam domain PF04153: NOT2 / NOT3
           / NOT5 family
          Length = 556

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -2

Query: 265 PFASIGSLGVVESSSPNLSPTATVILLGVSGNPIGLDPAKEGR*HSTSVDEVSN 104
           PF  +G L V+  S+P L    T + LG+    +GLD    G  + T     +N
Sbjct: 386 PFCLLGLLDVLNRSNPEL----TSLALGIDLTTLGLDLNSTGNLYKTFASPWTN 435


>At5g44990.1 68418.m05517 hypothetical protein
          Length = 350

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 235 VESSSPNLSPTATVILLGVSGNPIGLDPAKEGR*H 131
           +E+ +PN + TAT     VS +P    PA+ GR H
Sbjct: 5   MENENPNFARTATSFRNFVSKDPDSQFPAESGRYH 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,929,075
Number of Sequences: 28952
Number of extensions: 212349
Number of successful extensions: 507
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)